Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0376
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   192   1e-49
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   184   2e-47
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    30   0.83 
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   1.9  
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   1.9  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   3.4  
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   5.9  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    27   7.7  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  192 bits (467), Expect = 1e-49
 Identities = 90/125 (72%), Positives = 104/125 (83%), Gaps = 1/125 (0%)
 Frame = +3

Query: 36  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 212
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 213 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 392
           LDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY +
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 393 PLGRK 407
            LGRK
Sbjct: 121 ELGRK 125


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  184 bits (448), Expect = 2e-47
 Identities = 90/135 (66%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
 Frame = +3

Query: 36  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 212
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 213 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 392
           LDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY +
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 393 PLGRKXGAKLTXAEE 437
            +GRK   +    EE
Sbjct: 121 DIGRKKKGEAVTTEE 135


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 15  FFFDPTKMGISRDHWHKRRATGGK--RAPIRKKRKYELGRPAANTRLGPQR 161
           F  DP K    ++ W KRR   G+  R   R K++ +LGR     R+  +R
Sbjct: 206 FAMDPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 183 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 344
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 303 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKXGAKLTXA 431
           L  T  L  NA   VVD      ++ES+Y LP+ R  G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 313 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 182
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 90  APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 191
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin my5A
           (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/76 (19%), Positives = 33/76 (43%)
 Frame = +3

Query: 90  APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 269
           AP ++  +Y+LG+P+    L     H++ +   + +Y A R          E      R+
Sbjct: 279 APEQETERYQLGKPSTFHYLNQSNCHALDAIDDSKEYLATRKAMDVVGISPEEQDAIFRV 338

Query: 270 IDVVYNASNNELVRTK 317
           +  + +  N E  +++
Sbjct: 339 VAAILHLGNIEFAKSE 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,394,796
Number of Sequences: 28952
Number of extensions: 224944
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)