Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0375
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41500| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 31 0.86
SB_52214| Best HMM Match : Alpha_E3_glycop (HMM E-Value=5.1) 30 1.5
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 29 4.6
SB_49787| Best HMM Match : DUF1103 (HMM E-Value=4.4) 29 4.6
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 29 4.6
SB_12942| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 28 6.1
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 6.1
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 28 6.1
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014) 28 8.0
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 8.0
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_41500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 69.3 bits (162), Expect = 3e-12
Identities = 39/95 (41%), Positives = 50/95 (52%)
Frame = +1
Query: 394 VEDQNDPNYDSEAVTNGDIEFKQVIVEAEPEDIIRKSEPVILEYFEHGDTNAAAEEFLDF 573
V DQ+DPNY+SE E K++ E E+ +P+I+EYFEHGDT +
Sbjct: 109 VRDQHDPNYESEEDETEPYEIKEIKPELTVEEFELHVDPIIVEYFEHGDTEDVDLSLQEL 168
Query: 574 VTAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
+ R + ALD KA EMASVLISDL
Sbjct: 169 NISNRKFKIVVFAVTHALDRKATQREMASVLISDL 203
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 418 SSDRSGP---PRTPRASQIRADPTRLCLPPHLSSVTPCRGHCVVFGCSSSYDISGAASQR 248
SSD SG R ++ +D + C+ P + ++ HC V + D++G ASQR
Sbjct: 292 SSDGSGSCVNTREVGMNKTSSDRSGSCVNPRENEMSKASSHCSVLINPETRDVTGGASQR 351
Query: 247 S 245
S
Sbjct: 352 S 352
>SB_52214| Best HMM Match : Alpha_E3_glycop (HMM E-Value=5.1)
Length = 320
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 400 DQNDPNYDSEAVTNGDIEFKQVIVEAEPE 486
D ++PNY S+ N FK I+E +PE
Sbjct: 150 DNSEPNYQSKINFNNSFAFKDFILERKPE 178
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 64 HKINRTVAAMEVDRIASDSENVAMDEKPVVEQGAGDAATSNPERLRRKNKKYAR---SNS 234
HK+ VAA V A + A+ +G + TS + KN K A+ S++
Sbjct: 1575 HKLKEAVAAAAVTATAVATTGAAVAAASATTKGKSPSKTSATKATHAKNPKSAKPGSSST 1634
Query: 235 KDGPSA 252
K G SA
Sbjct: 1635 KPGTSA 1640
>SB_49787| Best HMM Match : DUF1103 (HMM E-Value=4.4)
Length = 450
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 94 EVDRIASDSENVAMDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVTP 261
+V+R + + + + AGD AT+N + + AR +S DGP P
Sbjct: 184 DVERENRLKQGIQSENMRKLRSKAGDKATNNAKEIALNAAHGARPSSADGPRRAVP 239
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 64 HKINRTVAAMEVDRIASDSENVAMDEKPVVEQGAGDAATSNPERLRRKNKKYAR---SNS 234
HK+ VAA V A + A+ +G + TS + KN K A+ S++
Sbjct: 470 HKLKEAVAAAAVTATAVATTGAAVAAASATTKGKSPSKTSATKATHAKNPKSAKPGSSST 529
Query: 235 KDGPSA 252
K G SA
Sbjct: 530 KPGTSA 535
>SB_12942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 297 TTQWPRQGVTEERWGGRQRR 356
T + PR VTEERW GR+ R
Sbjct: 285 TFESPRTMVTEERWEGREER 304
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 183 QSRAITSQEQEIRSF*QQGRAERCDAAPEIS*LEEQPKTTQ---WPRQGVTEERWGGRQR 353
+ R +EQ R ++ R E D E + E+ + + W R+ E RW +R
Sbjct: 1116 ERRRKEEEEQRRREEEERRRREEEDRLREEARRREEERRLEDERWEREREEERRWEEERR 1175
Query: 354 RVGSARI*DARGVRGGPERSELR 422
R R D RG R + S R
Sbjct: 1176 RRSMGRYPDDRGRRSPYDDSRWR 1198
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -2
Query: 412 DRSGPPRTPRASQIRADPTRLCLPPHLSSVTPCRGHCVVFGCS-SSYDISGAASQRSARP 236
D + PP+ P I ++P R+ LPP SS++ + H G S +S I G + P
Sbjct: 468 DSAPPPQMPPPQSIASEPQRMDLPPK-SSISQQQQHQRPQGLSVTSESIWGPSGPTQTSP 526
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 403 QNDPNYDSEAVTNGDIEFKQVIVEAEPEDII 495
+ D + DSE +T+ +E IVE+EPED I
Sbjct: 228 KGDEDDDSE-ITDSGLEILPAIVESEPEDAI 257
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 112 SDSENVAMDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSK 237
SDSE DEK V+ + D +SN + +RK KK + SK
Sbjct: 754 SDSE----DEKREVKSVSDDMLSSNKDNKKRKKKKKEKEKSK 791
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 403 QNDPNYDSEAVTNGDIEFKQVIVEAEPEDII 495
+ D + DSE +T+ +E IVE+EPED I
Sbjct: 7 KGDEDDDSE-ITDSGLEILPAIVESEPEDAI 36
>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
Length = 399
Score = 27.9 bits (59), Expect = 8.0
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Frame = -2
Query: 661 PRP-FRSASPCDPTLSPQLSRTPDDSSRRSQSLGTPRRPRSCLHAQNTLISQAPIYG*YP 485
P P R P P+ R P S+R + L P++P ++A G
Sbjct: 227 PAPRVRKTIPSSTDSLPRPGRPPSPSTRGMKPLPPPKKPDVVAEKDQKGGNEAG--GTKS 284
Query: 484 RAPLRL*PA*IRCRRW*PPPNRSSDRSGPPRTPR 383
+P R P + PPP D S PPRTPR
Sbjct: 285 HSPPRAKPPPLPRN---PPPK---DESTPPRTPR 312
>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 439 W*P-PPNRSSDRSGPPRTPRASQIRADPTR 353
W P PP+R SDR+ P + R+ + A P+R
Sbjct: 9 WTPAPPSRRSDRTPAPPSRRSDRTPAPPSR 38
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 433 PPPNRSSDRSGPPRTPRASQIRADPTRLCLPPHLSSVTP 317
PPP R PP R+SQ P+R PP + P
Sbjct: 317 PPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAP 355
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 133 MDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVT 258
++ +PVV+QG + + L K A +++DGPS +T
Sbjct: 525 INSRPVVDQGVSSISAITGQALSYKVPSNAFRDAEDGPSDLT 566
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.129 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,209,278
Number of Sequences: 59808
Number of extensions: 427103
Number of successful extensions: 1246
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -