Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0375
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 405 ERSELRFGGGHQRRHRIQAGH 467
           ERS  R G G  R HRI   H
Sbjct: 313 ERSRDRRGRGRSREHRIIPSH 333


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 84  DGTIYLVKYGL*YS*TKTVHAV 19
           DG++YL K  L ++   T HAV
Sbjct: 364 DGSLYLTKVQLIHAGNYTCHAV 385


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 61   FHKINRTVAAMEVDRIASDSENVAMDEKPV 150
            FH + +  AAM++ +      N  + +KPV
Sbjct: 1727 FHCMEKNEAAMKLKKRIEKGANPDLSQKPV 1756


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 545 FVSPCSKYSNITGSDLR 495
           FV  CS   N+ G+D R
Sbjct: 391 FVGDCSSLLNLPGNDAR 407


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 185 LDVAASPAPCSTTGFSSIATFSESEA 108
           LD+   P P     F+SIAT  + +A
Sbjct: 822 LDITTPPTPNLLRYFASIATNPKEQA 847


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.129    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,083
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)