Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0375
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t... 48 4e-06
At5g63190.2 68418.m07934 MA3 domain-containing protein low simil... 43 2e-04
At5g63190.1 68418.m07933 MA3 domain-containing protein low simil... 43 2e-04
At3g48390.1 68416.m05282 MA3 domain-containing protein similar t... 36 0.033
At1g04030.1 68414.m00390 expressed protein 33 0.13
At4g00752.1 68417.m00103 UBX domain-containing protein similar t... 31 0.71
At1g22730.1 68414.m02840 MA3 domain-containing protein contains ... 31 0.71
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 2.2
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 29 2.2
At3g60380.1 68416.m06753 expressed protein 29 2.8
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 29 2.8
At1g30190.1 68414.m03690 expressed protein ; expression supporte... 28 5.0
At1g13120.1 68414.m01521 expressed protein contains Prosite PS00... 28 5.0
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 28 6.6
At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family pr... 28 6.6
At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family pr... 28 6.6
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 6.6
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 6.6
At2g26070.1 68415.m03130 expressed protein 28 6.6
At1g61030.1 68414.m06871 expressed protein 28 6.6
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 27 8.7
At3g55560.1 68416.m06169 DNA-binding protein-related contains Pf... 27 8.7
At3g24550.1 68416.m03083 protein kinase family protein contains ... 27 8.7
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 27 8.7
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 27 8.7
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 27 8.7
>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 48.4 bits (110), Expect = 4e-06
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +1
Query: 388 EYVEDQNDPNYDSEAVTNGDIEFKQV-IVEAEPEDIIRKSEPVIL-EYFEHGDTNAAAEE 561
+Y D NDPNYDS G+ F+ V ++P D +K+ I+ EYF GD + AA +
Sbjct: 86 DYHIDPNDPNYDS-----GEEPFELVGATLSDPLDDYKKAAASIINEYFSTGDVDVAAAD 140
Query: 562 FLDFVTAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
++ ++ + + +A+D EMASVL+S L
Sbjct: 141 LIELGSSEYHPYFIKRLVSVAMDRHDKEKEMASVLLSAL 179
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 511 VILEYFEHGDTNAAAEEFLDFVTAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
+I EYF D D + + + + +ALD K EMASVL+S L
Sbjct: 422 IIHEYFNSDDIPELIRSLEDLGAPEYNPIFLKKLITLALDRKNHEKEMASVLLSSL 477
>At5g63190.2 68418.m07934 MA3 domain-containing protein low
similarity to programmed cell death 4 protein [Gallus
gallus] GI:12958564; contains Pfam profile PF02847: MA3
domain
Length = 702
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +1
Query: 400 DQNDPNYDS-EAVTNGDIEFKQVIVEAEPEDIIRKSEPVIL-EYFEHGDTNAAAEEFLDF 573
D+NDPNYDS E +G ++ ++P + +KS I+ EYF GD AA + +
Sbjct: 95 DKNDPNYDSGEDAYDGLVDSPV----SDPLNDYKKSVVSIIDEYFSTGDVKVAASDLREL 150
Query: 574 VTAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
++ + + +A+D EMASVL+S L
Sbjct: 151 GSSEYHPYFTKRLVSMAMDRHDKEKEMASVLLSAL 185
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 511 VILEYFEHGDTNAAAEEFLDFVTAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
+I EYF D D + + + + +ALD K EMASVL+S L
Sbjct: 428 IIQEYFLSDDIPELIRSLQDLGAPEYNPVFLKRLITLALDRKNREKEMASVLLSAL 483
>At5g63190.1 68418.m07933 MA3 domain-containing protein low
similarity to programmed cell death 4 protein [Gallus
gallus] GI:12958564; contains Pfam profile PF02847: MA3
domain
Length = 702
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +1
Query: 400 DQNDPNYDS-EAVTNGDIEFKQVIVEAEPEDIIRKSEPVIL-EYFEHGDTNAAAEEFLDF 573
D+NDPNYDS E +G ++ ++P + +KS I+ EYF GD AA + +
Sbjct: 95 DKNDPNYDSGEDAYDGLVDSPV----SDPLNDYKKSVVSIIDEYFSTGDVKVAASDLREL 150
Query: 574 VTAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
++ + + +A+D EMASVL+S L
Sbjct: 151 GSSEYHPYFTKRLVSMAMDRHDKEKEMASVLLSAL 185
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 511 VILEYFEHGDTNAAAEEFLDFVTAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
+I EYF D D + + + + +ALD K EMASVL+S L
Sbjct: 428 IIQEYFLSDDIPELIRSLQDLGAPEYNPVFLKRLITLALDRKNREKEMASVLLSAL 483
>At3g48390.1 68416.m05282 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 633
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 484 EDIIRKSEPVILEYFEHGDTNAAAEEFLDFVTAARSHLVCETIGEIALDHKAMHCEMASV 663
ED R+ +I EYF GD AA + +D + + + +A+D E ASV
Sbjct: 55 EDYKREVVSIIDEYFSSGDVEVAASDLMDLGLSEYHPYFVKRLVSMAMDRGNKEKEKASV 114
Query: 664 LISDL 678
L+S L
Sbjct: 115 LLSRL 119
>At1g04030.1 68414.m00390 expressed protein
Length = 418
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 142 KPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVTPLPKYRSWKNSR 294
K V Q GD +LRR N+ N DG + P+ WK+++
Sbjct: 168 KEVYTQDIGDKTEEIDSKLRRSNETVRDGNHYDGQGVLNPVENLTQWKSAK 218
>At4g00752.1 68417.m00103 UBX domain-containing protein similar to
Ara4-interacting protein [Arabidopsis thaliana]
GI:13160609; contains Pfam profiles PF00789: UBX domain,
PF02809: Ubiquitin interaction motif
Length = 469
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 263 SGVTALGPSLLLERAYFLFLRRNRSGLDVAASPAPCSTTG 144
S A PSLLL+ Y + R SG ++ SP+P S TG
Sbjct: 93 SAARAFRPSLLLDPNYRRNILRQLSGSALSGSPSPSSHTG 132
>At1g22730.1 68414.m02840 MA3 domain-containing protein contains
Pfam profile PF02847: MA3 domain; low similarity to
programmed cell death 4 protein [Gallus gallus]
GI:12958564
Length = 693
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 499 KSEPVILEYFEHGDTNAAAEEFLDFVTAARSHL---VCETIGEIALDHKAMHCEMASVLI 669
K++ +I EYF GDT+ + A+ S L + + +A+D K EMA VL+
Sbjct: 393 KAKSIIREYFLSGDTSEVVHCLDTELNASSSQLRAIFVKYLITLAMDRKKREKEMACVLV 452
Query: 670 SDL 678
S L
Sbjct: 453 STL 455
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/94 (23%), Positives = 42/94 (44%)
Frame = +1
Query: 397 EDQNDPNYDSEAVTNGDIEFKQVIVEAEPEDIIRKSEPVILEYFEHGDTNAAAEEFLDFV 576
+D DP +D+ NG + +A+ + +K+ ++ EYF D + E +
Sbjct: 62 DDLTDPIFDT-IEGNGHSDPTSCF-DADLSEYKKKATVIVEEYFGTNDVVSVVNELKELG 119
Query: 577 TAARSHLVCETIGEIALDHKAMHCEMASVLISDL 678
A + + + +A+D EMA+ L+S L
Sbjct: 120 MAEYRYYFVKKLVSMAMDRHDKEKEMAAFLLSTL 153
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.5 bits (63), Expect = 2.2
Identities = 34/91 (37%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = -2
Query: 607 SRTPDDSSRRSQSLGTPRRPRSCLHAQNTLISQAPIYG*YPRAPLRL*PA*IRCRRW*PP 428
SR P S++R+ RRPR L P+ P A R P R R PP
Sbjct: 521 SRAPSSSAKRASG-SRGRRPRPPLPPP---ARARPLP---PPARARPMPPPARARPL-PP 572
Query: 427 PNRSSDRSGP-PRTPRASQIRADPTRLCLPP 338
P RS DR P P P+AS R R LPP
Sbjct: 573 PARSYDRRPPVPLYPKASLKRDYDRRDELPP 603
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 100 DRIASDSENVAMDEKPVVEQGAGDAATSN-PERLRRKNKKYARSNSKDGPSAVTPLPKYR 276
+R ++E +A+ EK + ++ + PE+ ++K+KKY ++ + +P PK
Sbjct: 20 ERKRREAEELAVREKKISKKHKSKSKEEEKPEKSKKKSKKYEEVEEEEKSPSPSPSPKKS 79
Query: 277 SWKNSRRPRN 306
+ R+
Sbjct: 80 KESKKKHKRS 89
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 655 PFRSASPCDPTLSPQLSRTPDDSSRRSQSLGTPRRPRSCLHAQN 524
P S SP P SP+L P+D+ RRS L T PR H+++
Sbjct: 345 PSPSLSPSPP--SPEL--VPNDTRRRSPELVTDDTPRRASHSRH 384
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 312 RQGVTEERWGGRQRRVGSARI*DARGVRGGPERSELRFGGGHQRRH 449
R ++ WGG + + R RGV G + R GG RRH
Sbjct: 927 RSSSSQSIWGGHREFLSVVR--SGRGVHGHTRHAIARMRGGRTRRH 970
>At1g30190.1 68414.m03690 expressed protein ; expression supported
by MPSS
Length = 278
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 121 ENVAMDE-KPVVEQGAGDAATSNPERLRRKNKKYARSNS 234
++VAM+E KPV EQ N NK Y RS S
Sbjct: 160 DDVAMEEYKPVTEQTLASEEACNTRNHVNPNKPYGRSKS 198
>At1g13120.1 68414.m01521 expressed protein contains Prosite
PS00012: Phosphopantetheine attachment site; similar to
GLE1 (GI:3288817) {Homo sapiens}; EST gb|N37870 comes
from this gene
Length = 611
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 52 KSIFHKINRTVAAMEV-DRIASDSENVAMDEKPVVEQGAGDAATSNPE 192
K + K R VA EV DR A++ + ++K V+E G +ATSN +
Sbjct: 264 KEVERKAAREVAEKEVADRKAAEQK--LAEQKAVIESVTGSSATSNAQ 309
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 142 KPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPS 249
KPV++ G+GD+ P +R N + SN S
Sbjct: 8 KPVMDNGSGDSDDDKPLAFKRNNTVASNSNQSKSNS 43
>At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 379
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 285 EQPKTTQWPRQGVTEERWG 341
+QP T QWP G+ + WG
Sbjct: 324 QQPPTQQWPFDGLNQPVWG 342
>At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 426
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 285 EQPKTTQWPRQGVTEERWG 341
+QP T QWP G+ + WG
Sbjct: 371 QQPPTQQWPFDGLNQPVWG 389
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 27.9 bits (59), Expect = 6.6
Identities = 37/111 (33%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Frame = -2
Query: 649 RSASPCDPT----LSPQLSRTPDDSSRRSQ-SLGTPR--RPRSCLHAQNTLISQAPIYG* 491
RS SP P+ L LS P D S+ S S P RP S + I+ +
Sbjct: 140 RSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPTLRPAST-RVPSQRITPHSVPSP 198
Query: 490 YPRAPLRL*PA*IRCRRW*PPPNRSS----DRSGPPRTPRASQIRADPTRL 350
P +P P I + PP R+ D PP +PRA+ +RADP RL
Sbjct: 199 RPSSPRGASPQAISSK---PPSPRAEPPTLDTPRPP-SPRAASLRADPPRL 245
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 27.9 bits (59), Expect = 6.6
Identities = 37/111 (33%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Frame = -2
Query: 649 RSASPCDPT----LSPQLSRTPDDSSRRSQ-SLGTPR--RPRSCLHAQNTLISQAPIYG* 491
RS SP P+ L LS P D S+ S S P RP S + I+ +
Sbjct: 139 RSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPTLRPAST-RVPSQRITPHSVPSP 197
Query: 490 YPRAPLRL*PA*IRCRRW*PPPNRSS----DRSGPPRTPRASQIRADPTRL 350
P +P P I + PP R+ D PP +PRA+ +RADP RL
Sbjct: 198 RPSSPRGASPQAISSK---PPSPRAEPPTLDTPRPP-SPRAASLRADPPRL 244
>At2g26070.1 68415.m03130 expressed protein
Length = 250
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 388 PRASQIRADPTRLCLPPHLSSVTPCRG-HCVVFGCSSSYDISGAASQRS 245
P A ++ D T+ CLPP++ T G FG + ++D + ++S RS
Sbjct: 100 PPARYLQLDRTKCCLPPNMGGHTCKYGFKHTDFGTARTWDNALSSSTRS 148
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 194 RSGLDVAASPAPCSTTGFSSIATFSESEAMRS 99
+ G S CSTTGFSSI + S S+ +S
Sbjct: 419 KKGFVTIISSDTCSTTGFSSIKSLSVSKRNQS 450
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 381 ARGVRGGPERSELRFGGGHQRRHRIQAGHSRSGARG 488
+RG RGG R +GG R R +G S +RG
Sbjct: 660 SRGGRGGSSRGRDSWGGDDDRGSRRSSGGGSSWSRG 695
>At3g55560.1 68416.m06169 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 310
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 112 SDSENVAMDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVT 258
S E + DE+P VE G+G +T R R K N P VT
Sbjct: 64 SQEEQNSRDEQPAVEPGSGSGSTGRRPRGRPPGSK----NKPKSPVVVT 108
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.5 bits (58), Expect = 8.7
Identities = 35/111 (31%), Positives = 40/111 (36%), Gaps = 1/111 (0%)
Frame = -2
Query: 655 PFRSASPCDPTLSPQLSRT-PDDSSRRSQSLGTPRRPRSCLHAQNTLISQAPIYG*YPRA 479
P + +P P SP + T P SS SL P P S API P
Sbjct: 34 PPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPIT---PSP 90
Query: 478 PLRL*PA*IRCRRW*PPPNRSSDRSGPPRTPRASQIRADPTRLCLPPHLSS 326
P P+ R P PN+ GPP TP S R PP SS
Sbjct: 91 PSPTTPSNPRSP---PSPNQ-----GPPNTPSGSTPRTPSNTKPSPPSDSS 133
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 166 GDAATSNPE--RLRRKNKKYARSNSKDGPSAVTPLPKYRSWKNSR 294
G + + +P+ R RR++ Y+RS S+ G S + RSW SR
Sbjct: 952 GRSRSRSPDLVRPRRRSSSYSRSRSRSG-SYSRSRSRSRSWSRSR 995
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 322 TPCRGHCVVFGCS--SSYDISGAASQRSARPCC*NERISCSCDVIAR 188
+P G+ V FG S SSYD+S S R C + CD +++
Sbjct: 219 SPGCGYAVEFGGSESSSYDVSCLCSYRFCWNCSEDAHSPVDCDTVSK 265
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 433 PPPNRSSDRSGPPRTPRASQIRADPTRLCLPPHLSSVTP 317
PPP+ SSD S P ++ + P PP L S+ P
Sbjct: 18 PPPDTSSDGSAAPPPTDSAPPPSPPADSSPPPALPSLPP 56
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -2
Query: 352 LCLPPHLSSV-TPCRGHCVVFGCSSSYDISGAASQRSARPCC 230
+C+ +S V PC V CS S+ S + PCC
Sbjct: 655 ICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCC 696
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.129 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,801,643
Number of Sequences: 28952
Number of extensions: 284638
Number of successful extensions: 929
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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