Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0373
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0479 + 14529783-14530613                                         34   0.12 
04_03_0960 - 21257219-21257953                                         29   2.5  
07_03_1629 - 28246440-28247339                                         29   3.3  
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112...    29   4.4  
02_04_0025 - 19006493-19007040,19007665-19007899                       28   5.8  
03_06_0444 - 33979319-33980044                                         28   7.6  
02_04_0452 + 23044190-23045227                                         28   7.6  

>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 133 RPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 23
           R   MA  RR   +RRR WGR     R P   +R WL
Sbjct: 83  RRAGMAASRRFRGVRRRPWGRFSAEIRDPSLQKRLWL 119


>04_03_0960 - 21257219-21257953
          Length = 244

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 133 RPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 23
           R G++   R+   +RRR WG+     R P    R WL
Sbjct: 53  RQGAVPAARKYRGVRRRPWGKWAAEIRDPHRAARVWL 89


>07_03_1629 - 28246440-28247339
          Length = 299

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 112 PRRACHLRRRSWGRMCKRHRTPPCLRRTWL 23
           P R   +RRR WGR     R P    R WL
Sbjct: 36  PGRFLGVRRRPWGRYAAEIRDPTTKERHWL 65


>10_08_0206 +
           15809261-15809390,15810655-15810763,15811237-15811265,
           15811721-15813048
          Length = 531

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 127 GSMACPRRACHLRRRSWGRMCKRH 56
           G   C R   H+R   W R CK+H
Sbjct: 140 GPYHCRREGLHVRSNQWKRDCKKH 163


>02_04_0025 - 19006493-19007040,19007665-19007899
          Length = 260

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 127 GSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 23
           G+ A  R    +RRR WG+     R P    R WL
Sbjct: 79  GAAAAERHYRGVRRRPWGKWAAEIRDPNKAARVWL 113


>03_06_0444 - 33979319-33980044
          Length = 241

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 94  LRRRSWGRMCKRHRTPPCLRRTWL 23
           +R+R WGR     R P   RR WL
Sbjct: 85  VRQRPWGRFAAEIRDPHLRRRLWL 108


>02_04_0452 + 23044190-23045227
          Length = 345

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 94  LRRRSWGRMCKRHRTPPCLRRTWL 23
           +RRR WGR     R P    R WL
Sbjct: 62  VRRRPWGRFAAEIRDPASKERRWL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,841,510
Number of Sequences: 37544
Number of extensions: 134163
Number of successful extensions: 377
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)