Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0373
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 364 VSTIWNYIVKRFYV*F*IFKRRFYCISVSPLLDLDISYNLIT 489
           V TIW Y+  +FY+     K  F+C  + P + + +S ++ T
Sbjct: 62  VLTIWFYVGVQFYIMSSRTKGIFFCRYIWPFMSVPLSVSIFT 103


>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 140  FLPPWQHGLSPEGLPSPQAQL 78
            ++PPW+  L P GLP P  +L
Sbjct: 1327 YVPPWELPLPPSGLPLPLPRL 1347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,815
Number of Sequences: 59808
Number of extensions: 171592
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)