Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0368
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   201   5e-52
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   194   5e-50
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   190   1e-48
At3g06450.1 68416.m00746 anion exchange family protein similar t...    32   0.47 
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   3.3  
At5g03140.1 68418.m00262 lectin protein kinase family protein co...    29   4.4  
At3g05830.1 68416.m00654 expressed protein                             29   4.4  
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat...    28   5.8  
At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putat...    28   5.8  
At3g51290.1 68416.m05614 proline-rich family protein                   28   5.8  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    28   7.6  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   7.6  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  201 bits (490), Expect = 5e-52
 Identities = 87/150 (58%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
 Frame = +3

Query: 24  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 203
           E+ HFE+ D+GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 204 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LG 380
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLL 123

Query: 381 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 470
            Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 124 QQIKSGFDDGKDLVVSVMSAMGEEQINALK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  194 bits (473), Expect = 5e-50
 Identities = 85/150 (56%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
 Frame = +3

Query: 24  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 203
           ++ HFE+ D+GAS T+P Q   +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 204 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 380
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALL 123

Query: 381 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 470
           TQL+  F+ GK+++ +V+ + GEE + A+K
Sbjct: 124 TQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  190 bits (462), Expect = 1e-48
 Identities = 83/150 (55%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
 Frame = +3

Query: 24  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 203
           ++ HFE  +SGAS T+P     +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 204 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 380
           IF  KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L 
Sbjct: 64  IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLT 123

Query: 381 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 470
            Q+R  FD GK+++ +V+ S GEE + AVK
Sbjct: 124 AQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153


>At3g06450.1 68416.m00746 anion exchange family protein similar to
           putative Anion exchanger family members: GB:AAD39673,
           GB:AAD55295 [Arabidopsis thaliana]
          Length = 732

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 667 IASDVSEGEAPRGLRAPPLYYYSFFKLNLYTILC 566
           +AS +++ E    LR PP Y+Y  F L   TILC
Sbjct: 316 VASQLAQQE-DFNLRKPPAYHYDLFLLGFLTILC 348


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 354 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 455
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At5g03140.1 68418.m00262 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 711

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 124 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 17
           +P  +T+P +R     +   A+ PE P++K  SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666


>At3g05830.1 68416.m00654 expressed protein
          Length = 336

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +3

Query: 177 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 356
           AK  + G+D    K  ED+ P         V+ +D ++T + D+  + LM  +G  +   
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241

Query: 357 KIPDGDLGTQLRTDFDSGKELL 422
           K  +  L  Q RTD D  K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263


>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor. [Spinach]{Spinacia
           oleracea}
          Length = 563

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = +1

Query: 52  PGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKI 231
           P P  PSP       K++ L   +    +L+   P PE      +  L +  S +  + +
Sbjct: 80  PPPPSPSPSPSPQGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVL 139

Query: 232 SVPPHTTWTYL 264
           S  P   W ++
Sbjct: 140 SPLPVGAWAFI 150


>At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor [Spinach]{Spinacia
           oleracea}
          Length = 549

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/75 (20%), Positives = 31/75 (41%)
 Frame = +1

Query: 40  RPETPGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVK 219
           +P+ P P PP P       K++ L   V    +++   P+PE   +  +  L +    + 
Sbjct: 66  KPQPPPPSPPQPQG----AKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQLLSIFLFTIS 121

Query: 220 SMKISVPPHTTWTYL 264
            + +   P   W ++
Sbjct: 122 GLVLGPLPVGAWAFI 136


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 1   KTQQWVTSKTHTLRPETPGPQPPSP 75
           +T  W T+ T ++ P  P P PP P
Sbjct: 91  ETTTWTTTTTSSVLPPPPPPPPPPP 115


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 482 SCVCFDGDDALLTAGFQHGA 423
           +C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 127 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYLT*SAKTTN 288
           HA+ LKC     +   T+K+ W+  +   ++S   S      TT T  T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,713
Number of Sequences: 28952
Number of extensions: 362141
Number of successful extensions: 1110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)