Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0367
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ...    29   3.3  
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ...    29   3.3  
At5g18980.1 68418.m02255 expressed protein                             27   9.9  

>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 105 ASHFFPRVSLTTCRAMLDALGLILYRPNSTQLQVL-RNSGKCKSAAAGEN 251
           ASH+   VS+T+  AM       L  PN   L     +S  C+S A+G N
Sbjct: 194 ASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLN 243


>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 105 ASHFFPRVSLTTCRAMLDALGLILYRPNSTQLQVL-RNSGKCKSAAAGEN 251
           ASH+   VS+T+  AM       L  PN   L     +S  C+S A+G N
Sbjct: 194 ASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLN 243


>At5g18980.1 68418.m02255 expressed protein
          Length = 835

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 213 NSGKCKSAAAGENGMALVQVRDVMHHMLQFKYMLRSGLG 329
           N+GKC      E    +  VRDV+ H  ++  + + G+G
Sbjct: 539 NTGKCLRREISEIVFTVSNVRDVLKHGARYPKLQKLGIG 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,378
Number of Sequences: 28952
Number of extensions: 147181
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)