Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0366
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   2.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   4.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   4.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   6.3  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 119 ADKHCVXPTLATSGSRPCYKLXTHNIVYVF 208
           A KHC    +  +G +PC    T NI  V+
Sbjct: 38  ACKHCRQKKIKCNGGQPCISCKTLNIECVY 67


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 187 TQYCLCFLFVSLYL--KLTFSSAFNLVTTCKSNLIDQGV 297
           T   LC  ++S Y   KL  S  FNL+++  SNL  + V
Sbjct: 242 TVLILCSTYISTYSYSKLAQSVIFNLISSPVSNLAFENV 280


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 172 TWSRSRCCQCWXYTMLVGL 116
           TW +   C CW +   VGL
Sbjct: 34  TWVQCDGCDCWQHASCVGL 52


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 262  LRD*MQKKMLILNRGKQTKNIDNI 191
            L D +QK++ +LN   Q K ID+I
Sbjct: 1161 LPDWLQKRVAVLNSKYQQKKIDSI 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,562
Number of Sequences: 5004
Number of extensions: 23202
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)