Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0366
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_41188| Best HMM Match : BacA (HMM E-Value=0.18)                     26   8.0  
SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +1

Query: 184 YTQYCLCFLFVSLYLKLTF--SSAFNL-VTTCKSNLIDQGV--LXNSIIGTDILDKCIL 345
           YT Y +CF F  + + LT   SS F       K+N     +  L N   G+ ++  CI+
Sbjct: 696 YTDYMICFCFFGILMLLTLLVSSGFQFRYFEVKTNTTSAAIAALCNIHYGSCMIAACIM 754


>SB_41188| Best HMM Match : BacA (HMM E-Value=0.18)
          Length = 405

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +1

Query: 184 YTQYCLCFLFVSLYLKLTF--SSAFNL-VTTCKSNLIDQGV--LXNSIIGTDILDKCIL 345
           YT Y +CF F  + + LT   SS F       K+N     +  L N   G+ ++  CI+
Sbjct: 270 YTDYMICFCFFGILMLLTLLVSSGFQFRYFEVKTNTTSAAIAALCNIHYGSCMIAACIM 328


>SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 220 GKQTKNIDNIVCXQFVTWSRSRCCQCWXY 134
           GK+  NI  I+C + + W+    C+ W Y
Sbjct: 126 GKEITNICTIICFESIPWA----CRYWEY 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,117,209
Number of Sequences: 59808
Number of extensions: 177758
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)