Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0366
(364 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 28 1.7
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 28 1.7
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 26 7.0
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 26 7.0
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 26 7.0
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 26 7.0
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 26 7.0
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p... 26 9.3
AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine re... 26 9.3
AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine r... 26 9.3
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 246 CI*SRNDMQK*FNRSRCIXEFNYRHRYIRQV 338
C +N++ NR+ CI F+Y +Y+RQ+
Sbjct: 727 CTNDKNEILISDNRAHCIKVFSYEGQYLRQI 757
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 246 CI*SRNDMQK*FNRSRCIXEFNYRHRYIRQV 338
C +N++ NR+ CI F+Y +Y+RQ+
Sbjct: 727 CTNDKNEILISDNRAHCIKVFSYEGQYLRQI 757
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 201 MFFVCFPLFKINIFFCI 251
MFF+ FP F +NIF +
Sbjct: 988 MFFIVFPFFFVNIFVAL 1004
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 201 MFFVCFPLFKINIFFCI 251
MFF+ FP F +NIF +
Sbjct: 988 MFFIVFPFFFVNIFVAL 1004
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 201 MFFVCFPLFKINIFFCI 251
MFF+ FP F +NIF +
Sbjct: 1107 MFFIVFPFFFVNIFVAL 1123
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 201 MFFVCFPLFKINIFFCI 251
MFF+ FP F +NIF +
Sbjct: 594 MFFIVFPFFFVNIFVAL 610
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 201 MFFVCFPLFKINIFFCI 251
MFF+ FP F +NIF +
Sbjct: 1107 MFFIVFPFFFVNIFVAL 1123
>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
protein C06A5.1 protein.
Length = 1932
Score = 25.8 bits (54), Expect = 9.3
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 163 ATMLQTXYTQYCLCFLF--VSLYLKLTFSSAFNLVTTCKSNLIDQGVLXNSIIGTDILDK 336
+T+L+ YTQ C F+F +S Y K ++++ + T L + G ++ D
Sbjct: 1511 STILEKYYTQLCSIFVFRLISAYCKKYPLASYSEMFT----LREPGNKEEFVLNRRAFDN 1566
Query: 337 CIL 345
CIL
Sbjct: 1567 CIL 1569
>AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine
receptor, class x protein65 protein.
Length = 293
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 145 IGNIWIATMLQTXYTQYCLCFLFVSLYLK-LTFS-SAFNLVTTCKSNLIDQGVLXNSIIG 318
IG +W T++Q LC+ + ++ LTF+ + F + + + V+ ++
Sbjct: 124 IGVLWCYTLIQATVLYEVLCYFYFDEEIRFLTFTKTPFCAIIGTYGDFLKNTVIVTFMMS 183
Query: 319 TDILD 333
DIL+
Sbjct: 184 VDILN 188
>AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein20 protein.
Length = 338
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 355 FFFIKYTCLIYLCL*LNSLIHLDRLNYFCMSLRD*MQKKMLILNRGKQTKNIDNI 191
F+F+ Y L+ + L + ++YFC+ M+ + I R ++IDNI
Sbjct: 125 FYFMPYGLLLSVIYVLFHMSVWAMIDYFCLHSASEMRDYIRIPFRNLHNESIDNI 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,585,611
Number of Sequences: 27780
Number of extensions: 137822
Number of successful extensions: 311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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