Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0366
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.64 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   1.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.9  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   5.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    20   7.8  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    20   7.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 286 RLNYFCMSLRD*MQKKMLILNRGKQTKNIDNIVCXQFVTWSRSRCCQ 146
           RL+   MS +  ++K  L LN       I N++C   +    S C Q
Sbjct: 251 RLSSDNMSKKSPVRKATLFLNMASVFMRIFNLICMMLLIGHWSGCLQ 297


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 159 PDVANVGXTQCLSAYICLASVLVP 88
           P+V N    +C S  I +A+ L+P
Sbjct: 58  PEVLNNHCNRCTSRQIGIANTLIP 81


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 338 HLSNISVPIIEFXNT 294
           HL NI  P++EF  T
Sbjct: 4   HLKNIMKPLMEFSAT 18


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 273 FACRYEIKCRRKC 235
           F CRYE  C   C
Sbjct: 735 FLCRYEAHCFALC 747


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 268 MSLRD*MQKKMLILNRGKQTKNIDNI 191
           +++ D M KKM I    K  KN+  +
Sbjct: 17  LAIEDTMSKKMTIEEAKKTIKNLRKV 42


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 346 IKYTCLIYLCL*LNSLIHLDRLNYFC 269
           +K T +  LC+   +L+H D +   C
Sbjct: 1   MKITIVSLLCVIYCALVHADTVAILC 26


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 346 IKYTCLIYLCL*LNSLIHLDRLNYFC 269
           +K T +  LC+   +L+H D +   C
Sbjct: 1   MKITIVSLLCVIYCALVHADTVAILC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,134
Number of Sequences: 438
Number of extensions: 1549
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)