Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0366
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr...    27   3.7  
At5g25050.1 68418.m02969 integral membrane transporter family pr...    27   3.7  
At5g25040.1 68418.m02967 integral membrane transporter family pr...    26   6.5  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    26   8.6  
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    26   8.6  

>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -3

Query: 83  ATTSPPEPRSLIGRVRREQ--ERL 18
           ATTSP +P+SL  + RRE+  ERL
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERL 227


>At5g25050.1 68418.m02969 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains 7 transmembrane domains;
           contains Pfam PF03092: BT1 family; contains TIGRFAMS
           TIGR00788: folate/biopterin transporter
          Length = 499

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 139 SNIGNIWIATMLQTXYTQYCLCFLFV 216
           +  GN+W+A +++       LCFLF+
Sbjct: 429 TEFGNLWLAVLVRNVMRLLPLCFLFL 454


>At5g25040.1 68418.m02967 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains Pfam PF03092: BT1
           family; contains TIGRFAMS TIGR00788: folate/biopterin
           transporter; Interpro IPR001991/ PR00173
           Sodium:dicarboxylater symporter family
          Length = 492

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 139 SNIGNIWIATMLQTXYTQYCLCFLFV 216
           +  GN+W+A +++       +CFLF+
Sbjct: 427 TEFGNLWLAVLVRNVMRLLPICFLFL 452


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 166  TMLQTXYTQYCLCFLFVSLY 225
            TML T  +QY LC++ VS++
Sbjct: 1829 TMLGTIASQYYLCYMTVSMF 1848


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 80  TTSPPEPRSLIGRVRREQ--ERLTL 12
           TTSP +P+SL  + RRE+  ERL +
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKI 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,927,610
Number of Sequences: 28952
Number of extensions: 119256
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)