Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0365
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8QNP2 Cluster: EsV-1-19; n=1; Ectocarpus siliculosus v...    34   3.9  
UniRef50_A3LUS5 Cluster: Predicted protein; n=2; Saccharomycetac...    34   3.9  
UniRef50_A5JZC7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_O43952 Cluster: G-quartet DNA-binding protein TGP1; n=2...    33   6.7  
UniRef50_Q4YTM3 Cluster: Putative uncharacterized protein; n=3; ...    33   8.9  
UniRef50_A0C933 Cluster: Chromosome undetermined scaffold_16, wh...    33   8.9  
UniRef50_Q0UXW7 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   8.9  
UniRef50_Q7VEJ4 Cluster: Probable GTPase engC; n=3; Prochlorococ...    33   8.9  

>UniRef50_Q8QNP2 Cluster: EsV-1-19; n=1; Ectocarpus siliculosus
           virus 1|Rep: EsV-1-19 - Ectocarpus siliculosus virus 1
          Length = 232

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +3

Query: 204 VQIISKIYNMF*TDFYTYYNLDNLRKVCELNAG---QITKCRTIGILQSLNGRYYLTELD 374
           ++II+++     T  + + + D++ K+ E   G   +  +C TI +  SL   YY++E D
Sbjct: 32  LEIITRVCAKDKTKVFVFSDKDDIAKIQEWREGFGNESRECHTIFVWDSLI--YYISESD 89

Query: 375 KPNLIPEFRIQVS 413
           KP  + E+ + +S
Sbjct: 90  KPKTLKEWELLLS 102


>UniRef50_A3LUS5 Cluster: Predicted protein; n=2;
           Saccharomycetaceae|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 788

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 133 IGIFNKWHFYFAIYCKILWSSKYSKIINNVGYVMLTVFWI 14
           +G F    F F I+   LW + Y KI   VG +++  FWI
Sbjct: 572 LGGFLTIAFTFLIWNSTLWRASYRKIFEYVGLILVNSFWI 611


>UniRef50_A5JZC7 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 3304

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = -1

Query: 625  KSSQSLCFLRFARCIVVTEFNVSLALRAIGMVNICSILAKITGRFFHCSVPKTCTGYGIR 446
            K   SL F  F    ++  +N+ L L  IG+   C+ L+KI G FF+ ++    T     
Sbjct: 2429 KPDDSLQFSHFFLYPLMRVYNLFLFLNEIGL---CNSLSKIVGHFFYFAMKGGHTVREEL 2485

Query: 445  VECTGSLR 422
             ECTG  R
Sbjct: 2486 AECTGYAR 2493


>UniRef50_O43952 Cluster: G-quartet DNA-binding protein TGP1; n=2;
           Tetrahymena thermophila|Rep: G-quartet DNA-binding
           protein TGP1 - Tetrahymena thermophila
          Length = 725

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 459 PVQVFGTLQWKNRPVIFAKILQMLTIPMALKARDTLNSVTTIHL 590
           PV++ G  QW N   +  KI+ + T   +L A+    S T ++L
Sbjct: 286 PVKISGLQQWNNNQTVIGKIVSLRTEDKSLPAKQDGTSTTMVYL 329


>UniRef50_Q4YTM3 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 778

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 46  HYLLFWNIWMTTEFYNKLRNKN 111
           H++L++N W  T  Y+KL++KN
Sbjct: 295 HFMLYYNWWSNTNIYDKLKSKN 316


>UniRef50_A0C933 Cluster: Chromosome undetermined scaffold_16, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_16,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 783

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 220 FEII*TYLNLASRSMQNYRRYVFKMHVTIIGIFNKWHFYFAI-YCKILWSSKYSKIINNV 44
           FE+   ++ L  +  +   +Y+  MH  ++ + N ++ YF +    + WS   S++ N +
Sbjct: 613 FELQQVWIKLTKKFKKKDCKYILGMHTQLMHVVNAFYHYFQMDIIAVQWSKMISRMQNEI 672

Query: 43  GYVML 29
            + ++
Sbjct: 673 NFELM 677


>UniRef50_Q0UXW7 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 398

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 264 LDNLRKVCELNAGQITKCRTIGI-LQSLNGRYYLTELDKPNLIPEFRIQVSMVYLKE 431
           L  +RK C  NAG     + +G  LQ    R + T LD+  +IPE  I VS+   +E
Sbjct: 234 LQLIRKACADNAGSSEALKLLGEWLQEKMPRAFETVLDRDEVIPEVIISVSIPMTQE 290


>UniRef50_Q7VEJ4 Cluster: Probable GTPase engC; n=3; Prochlorococcus
           marinus|Rep: Probable GTPase engC - Prochlorococcus
           marinus
          Length = 309

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 303 QITKCRTIGILQSLNGRYYLTELDKPNLIPE 395
           +I K R  GI+ +L   YY+ ++D  NLIPE
Sbjct: 3   EINKDRIKGIVLALKANYYIVQIDTINLIPE 33


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,368,192
Number of Sequences: 1657284
Number of extensions: 13945834
Number of successful extensions: 30738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30705
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)