Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0365
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    29   0.64 
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   2.0  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    27   2.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.4  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    27   3.4  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   4.5  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   7.9  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 261 NLDNLRKVCELNAGQITKCRTIGILQSLNG----RYYLTELDKPNLIPEFRIQVSMV 419
           NLD+ RK   +   ++    T+ ++  +NG     +Y T+++   L PEF  + SMV
Sbjct: 166 NLDDNRKFSRIQKNKLDPLITVNLVPIVNGENCFNFYETQMETNFLSPEFIKKPSMV 222


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 291 LNAGQITKCRTIGILQSLNGRYYLTELDKPNLIPEFRIQVSMVYL 425
           L+ GQ+     + +L  LN +Y+L+ + K N +PE   ++ M +L
Sbjct: 329 LSIGQVF---AVFVLLPLNQKYWLSAVQKNNGVPEPEFRLPMAFL 370


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 136 IIGIFNKWHFYFAIYCKILWSSKYSKIINNVGYVMLTVFWI 14
           +IGI+ + ++Y   Y K+LW   Y      V  +MLT+ ++
Sbjct: 384 LIGIYGQMNYYLK-YWKLLWFLNYGYTDILVLILMLTILYL 423


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 127  IFNKWHFYFAIYCK-ILWSSKYSKIINNV 44
            +F+KWH Y   Y +  L S++Y  I N+V
Sbjct: 1204 LFSKWHKYLTSYFESCLLSTEYMHIYNSV 1232


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 85  ILWSSKYSKIINNVGYVMLTVF 20
           +LW SKY+ I+NN    ++ +F
Sbjct: 120 VLWDSKYNTIVNNESAEIIRMF 141


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 562 VSLALRAIGMVNICSILAKITGRFFHCSVPKTCTGYGIRVEC 437
           V + L ++ + N+C +  + T    + + PK      I +EC
Sbjct: 326 VQIILHSVNLKNVCDLFLRYTRDIHYKNTPKDPNFLKISIEC 367


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 249 YTYYNLDNLRKVCE-LNAGQITKCRTIGILQSLNGRYYLTELDKPNLIPEF 398
           YT   +D    +   L+  + T+  ++  +   N +Y  TE  KPN++P F
Sbjct: 398 YTVVKVDFYNNIKSYLSEVKNTEIHSLEDIVEYNNKYMGTEGGKPNIVPAF 448


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 26  CQHNITHIIYYFGIFG*PQNFTINCEIKMPF-VKNTNYRDMHFED 157
           C  N+T++ +   I    QN   NC+ K+ F +   ++R M   D
Sbjct: 26  CYRNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLND 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,009
Number of Sequences: 5004
Number of extensions: 65848
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)