Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0365
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742...    30   2.0  
05_03_0288 - 11653136-11654074,11655252-11655965                       30   2.0  
04_03_0994 - 21514495-21515610                                         28   8.2  

>08_02_0717 +
           20372728-20372836,20372936-20373078,20374131-20374211,
           20374307-20374510,20374789-20374796,20375153-20375245,
           20375377-20375500,20375585-20375650,20375841-20375907,
           20376600-20376676,20377032-20377145,20377546-20377623,
           20377705-20377856,20377960-20378020,20378292-20378398,
           20378497-20378562,20379099-20379177,20379671-20379967
          Length = 641

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -1

Query: 187 SRSMQNYRRYVFKMHVTIIGIFNKWHFYFAIYCKILWSSKYSKIINNVGYVMLT 26
           S  M+N++ Y+ K  + ++G+   W+F F  +  +++    S  + N   +M T
Sbjct: 137 SLPMENFKCYLRKEPIGVVGLITPWYFTFFSHPALIFIYDPSMALMNYPLLMAT 190


>05_03_0288 - 11653136-11654074,11655252-11655965
          Length = 550

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 142 VTIIGIFNKWHFYFAIYCKILWSSKYSKIINNVGYVM 32
           V + G+ +K H  F+ YCK + S++ S I+    YV+
Sbjct: 220 VGLAGVGSKMHHLFSRYCKCICSTRNSAILMQETYVV 256


>04_03_0994 - 21514495-21515610
          Length = 371

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 258 YNLDNLRKVCELNAGQITKCRTIGILQSLNGRYYLTELDK 377
           Y ++ LR VCE    +    RT+  + +  G +   EL+K
Sbjct: 289 YKMERLRLVCEDKLCEYVTVRTVAAMLAFAGEHQCPELEK 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,456
Number of Sequences: 37544
Number of extensions: 336204
Number of successful extensions: 710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)