Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0365
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              29   4.8  
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 28   6.3  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
 Frame = -1

Query: 184 RSMQNYRRYVFKMHVTIIGIFNKW------HFYFAIYCKIL-WSSKYSKIINNVGYV 35
           R+ ++Y   + K    +IG F  W       F+ AI C I  W +  SK I N  ++
Sbjct: 340 RAAKSYHECLLKYTDNVIGTFKYWFFIHSVFFFLAILCSIAGWVAVVSKAIENDSHI 396


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = +3

Query: 306  ITKCRTIGILQSLNGRYYLTELDKPNLIPEFRIQVSMVYLKE----PVHSTLIPYPVQVF 473
            +++   +GI +++NG     EL  P     F +Q +   +KE     + S L+    QV 
Sbjct: 736  LSQTSDVGITETINGAPLKFELWLPGRTEVFLLQANNSEIKERWISEIRSVLLHQFDQVK 795

Query: 474  GTLQWKNRPVIFAKILQMLTIPMALKARDTLNSVTTIHLAKR 599
             + +WK+ P +       ++ P A K++  L  ++   L  R
Sbjct: 796  DSAKWKSTPALNDDKALGISRPRA-KSQSNLEGLSPAGLGTR 836


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 404 SSVYGLPQRTCTFNPNTISSTSFWYTAVEKS 496
           S V G P   C  + NTI     WY A+ K+
Sbjct: 338 SFVLGWPTTNCVLSFNTIEERDAWYIALAKN 368


>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 91  CKILWSSKYSKIINNVGY 38
           C ILWS +Y ++I++ GY
Sbjct: 387 CSILWSKEYKELISSHGY 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,390,852
Number of Sequences: 59808
Number of extensions: 440791
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)