Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0365
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X65882-1|CAA46713.1|  133|Homo sapiens NDP protein.                    30   9.1  
X65724-1|CAA46639.1|  133|Homo sapiens protein ( H.sapiens DNA f...    30   9.1  
BC029901-1|AAH29901.1|  133|Homo sapiens Norrie disease (pseudog...    30   9.1  
AL034370-1|CAA22268.1|  133|Homo sapiens Norrie disease (pseudog...    30   9.1  

>X65882-1|CAA46713.1|  133|Homo sapiens NDP protein.
          Length = 133

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -1

Query: 640 AHNQVKSSQSLCFLRFARCIVVTEFNVSLALRAIGMVNICSILAKITGRFFHCSVPKTCT 461
           +H   K S  +  L  ARC    E + S A R+  +V+  ++L +      HC  P+T  
Sbjct: 49  SHPLYKCSSKMVLL--ARC----EGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSK 102

Query: 460 GYGIRVECTGSLR*T 416
              +R+ C+G +R T
Sbjct: 103 LKALRLRCSGGMRLT 117


>X65724-1|CAA46639.1|  133|Homo sapiens protein ( H.sapiens DNA for
           ORF1 and ORF2 from chromosome X. ).
          Length = 133

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -1

Query: 640 AHNQVKSSQSLCFLRFARCIVVTEFNVSLALRAIGMVNICSILAKITGRFFHCSVPKTCT 461
           +H   K S  +  L  ARC    E + S A R+  +V+  ++L +      HC  P+T  
Sbjct: 49  SHPLYKCSSKMVLL--ARC----EGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSK 102

Query: 460 GYGIRVECTGSLR*T 416
              +R+ C+G +R T
Sbjct: 103 LKALRLRCSGGMRLT 117


>BC029901-1|AAH29901.1|  133|Homo sapiens Norrie disease
           (pseudoglioma) protein.
          Length = 133

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -1

Query: 640 AHNQVKSSQSLCFLRFARCIVVTEFNVSLALRAIGMVNICSILAKITGRFFHCSVPKTCT 461
           +H   K S  +  L  ARC    E + S A R+  +V+  ++L +      HC  P+T  
Sbjct: 49  SHPLYKCSSKMVLL--ARC----EGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSK 102

Query: 460 GYGIRVECTGSLR*T 416
              +R+ C+G +R T
Sbjct: 103 LKALRLRCSGGMRLT 117


>AL034370-1|CAA22268.1|  133|Homo sapiens Norrie disease
           (pseudoglioma) protein.
          Length = 133

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -1

Query: 640 AHNQVKSSQSLCFLRFARCIVVTEFNVSLALRAIGMVNICSILAKITGRFFHCSVPKTCT 461
           +H   K S  +  L  ARC    E + S A R+  +V+  ++L +      HC  P+T  
Sbjct: 49  SHPLYKCSSKMVLL--ARC----EGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSK 102

Query: 460 GYGIRVECTGSLR*T 416
              +R+ C+G +R T
Sbjct: 103 LKALRLRCSGGMRLT 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,593,629
Number of Sequences: 237096
Number of extensions: 1934225
Number of successful extensions: 3257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3257
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)