Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0365
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 375 CPV--RLNNSARLSSVVFQWFYISLF 304
           CP+  RLN+      + F WF+++ F
Sbjct: 160 CPIDGRLNSKQAAVIIAFTWFWVTPF 185


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 375 CPV--RLNNSARLSSVVFQWFYISLF 304
           CP+  RLN+      + F WF+++ F
Sbjct: 160 CPIDGRLNSKQAAVIIAFTWFWVTPF 185


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 199 LNLASRSMQNYRRYVFKMHVTIIGI 125
           LNLA   +Q+  RY F+ ++ +  I
Sbjct: 507 LNLARNKVQHVERYAFERNMRLEAI 531


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 604 NTVIVMTSLDYVQKKTVKKFKICIICFLNXWW 699
           N +  MT  D + K +   F +C +CF   +W
Sbjct: 394 NKLYGMTPSD-IDKYSRIVFPVCFVCFNLMYW 424


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 604 NTVIVMTSLDYVQKKTVKKFKICIICFLNXWW 699
           N +  MT  D + K +   F +C +CF   +W
Sbjct: 394 NKLYGMTPSD-IDKYSRIVFPVCFVCFNLMYW 424


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 106 YFAIYCKILWSSKYSKIINNVGYVMLTVFWI 14
           YF I+  + W+ K     +   Y +LT+  I
Sbjct: 221 YFCIWKGVKWTGKVVYFTSLFPYALLTILLI 251


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 106 YFAIYCKILWSSKYSKIINNVGYVMLTVFWI 14
           YF I+  + W+ K     +   Y +LT+  I
Sbjct: 274 YFCIWKGVKWTGKVVYFTSLFPYALLTILLI 304


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 604 NTVIVMTSLDYVQKKTVKKFKICIICFLNXWW 699
           N +  MT  D + K +   F +C +CF   +W
Sbjct: 332 NKLYGMTPSD-IDKYSRIVFPVCFVCFNLMYW 362


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 326 WNTTELKRALLFNRTGQT 379
           W+  +L RAL   R+GQT
Sbjct: 520 WSPADLDRALEAIRSGQT 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,594
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)