Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0364
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   3.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   8.4  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 192 FLFATHLASVFVTVLYTSLMRIFNNNNIS*IY 287
           FLF     S+ +T  Y      FN++N++ +Y
Sbjct: 237 FLFVLSTFSICITQFYYCYDSGFNSDNLTDVY 268


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 449 GFLDYIKNDKDIE 411
           GFL Y K D+D++
Sbjct: 84  GFLTYTKADRDVD 96


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 154 TNIIERATTSTFFFFSLRIWQV 219
           +N +E    +TFF  +L +W V
Sbjct: 4   SNPLEAFKLNTFFLKALTVWHV 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,633
Number of Sequences: 336
Number of extensions: 3194
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)