Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0364
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   4.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 612 YNSXFTSSYLYYNYIS 659
           YN+ + S  LYYN I+
Sbjct: 314 YNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 612 YNSXFTSSYLYYNYIS 659
           YN+ + S  LYYN I+
Sbjct: 325 YNNNYNSKKLYYNIIN 340


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -1

Query: 236 QNCYKNTCQMRSEKKKKVDVVARSMMFVACGQWNLS 129
           +NC ++       + K++DV++R    +    +NL+
Sbjct: 398 KNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNLA 433


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -1

Query: 236 QNCYKNTCQMRSEKKKKVDVVARSMMFVACGQWNLS 129
           +NC ++       + K++DV++R    +    +NL+
Sbjct: 398 KNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNLA 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,183
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)