BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0364 (785 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1 f... 30 2.0 At4g11000.1 68417.m01789 ankyrin repeat family protein contains ... 28 6.1 At5g43880.1 68418.m05366 expressed protein 28 8.1 >At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1 family protein similar to SP|Q9LD45 Bax inhibitor-1 (BI-1) (AtBI-1) {Arabidopsis thaliana}; contains Pfam profile PF01027: Uncharacterized protein family UPF0005 Length = 247 Score = 29.9 bits (64), Expect = 2.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 159 HHRARDHVNFFFLFATHLASVFVTVLYTSLMR 254 HH D+V F F T AS+FV +L ++ R Sbjct: 205 HHGDMDYVQHSFTFFTDFASLFVQILVLNMFR 236 >At4g11000.1 68417.m01789 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023 Length = 406 Score = 28.3 bits (60), Expect = 6.1 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3 Query: 555 KWSLVFGTILMGKCERLLVYNSXFTSSYLYYNYIS 659 KW L++G++ L Y++ F SSY +Y+S Sbjct: 326 KWKLLYGSVAALSIAALASYSTIFPSSYDANSYLS 360 >At5g43880.1 68418.m05366 expressed protein Length = 836 Score = 27.9 bits (59), Expect = 8.1 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%) Frame = +1 Query: 25 YLGPFESKPTSPARGAP-----CRPTNEALAEAWS 114 Y PF S P S A G+P CR + L+E W+ Sbjct: 357 YDSPFSSSPFSRASGSPESSSVCREAKKRLSERWA 391 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,703,969 Number of Sequences: 28952 Number of extensions: 250844 Number of successful extensions: 531 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 530 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1765546400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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