Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0363
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09900.1 68417.m01622 hydrolase, alpha/beta fold family prote...    32   0.35 
At1g60640.1 68414.m06826 expressed protein                             30   1.4  
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi...    29   3.3  
At1g36390.2 68414.m04521 co-chaperone grpE family protein simila...    29   3.3  
At1g36390.1 68414.m04520 co-chaperone grpE family protein simila...    29   3.3  
At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containi...    29   4.4  
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d...    29   4.4  
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim...    29   4.4  
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept...    28   5.8  
At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger) fa...    28   7.6  
At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pf...    28   7.6  
At2g22795.1 68415.m02704 expressed protein                             28   7.6  

>At4g09900.1 68417.m01622 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393, SP|Q40708 PIR7A protein {Oryza
           sativa}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 349

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/45 (46%), Positives = 24/45 (53%)
 Frame = +2

Query: 14  QRPILPDS*HNIHQVALSAEHHGAQVLVVDDGRTGPLIGSGSCRR 148
           QR +L D   N+H+ ALS   H AQV    DG     IGS S RR
Sbjct: 31  QRKLLADE-ENLHRRALSMAIHQAQVSQRFDGSMSRRIGSTSSRR 74


>At1g60640.1 68414.m06826 expressed protein
          Length = 340

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
 Frame = +3

Query: 147 DGEVWEENDHEVLIRSARGAKNREACRYVRGAWS-ECDSKTNIRSRKLTLKKGDPANCEV 323
           +GE  E  D E   +  +   NR A R +R +   E DS T     +     G P+  + 
Sbjct: 195 NGENEEVEDPETPSQEKQIKGNRRARRELRRSQKQEKDSSTKHGENEEVDNSGTPSQGKQ 254

Query: 324 VKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDST----CDQSRRKTRKCNKNK 491
           +K   +  ++  R EK      + +GE    D  ++ S          SRR+ ++  K +
Sbjct: 255 IKENSRARRQRKRLEKQGKGSLTKHGENEEVDNPETPSQEKQIKGNSSSRRQLKRSEKQE 314

Query: 492 QVKLAKD 512
           ++   K+
Sbjct: 315 KIPSTKE 321


>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 721

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 334 SRKSARELAAMKSHLGANAASMGRCPGPIS*SPTAIRLATKVGAKLGNVTRISKSS 501
           S+ S    AA  S      +S  +  G  S +    R +++VGAK GN+ R S +S
Sbjct: 94  SKSSNLSSAAKSSKSSTTPSSAAQFGGSYSPARAQSRASSQVGAKTGNIIRPSSNS 149


>At1g36390.2 68414.m04521 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 249 ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 428
           + D KT IRS K  L  GD  +   ++T+   CK      K      S++ +++   ++K
Sbjct: 72  QADVKTLIRSYKQALLNGDETSVTEIETM--FCKIEKEKNKMDQKVLSLSMKIASEKEMK 129

Query: 429 SNSDSTCDQSRRKTRK 476
               +  D +R+K  K
Sbjct: 130 IRLQADFDNTRKKLDK 145


>At1g36390.1 68414.m04520 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 249 ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 428
           + D KT IRS K  L  GD  +   ++T+   CK      K      S++ +++   ++K
Sbjct: 72  QADVKTLIRSYKQALLNGDETSVTEIETM--FCKIEKEKNKMDQKVLSLSMKIASEKEMK 129

Query: 429 SNSDSTCDQSRRKTRK 476
               +  D +R+K  K
Sbjct: 130 IRLQADFDNTRKKLDK 145


>At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 599

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 162 EENDHEVLIRSARG-AKNREACRYV 233
           ++N + VLIR   G  K+REACRY+
Sbjct: 507 DDNSYTVLIRGLIGEGKSREACRYL 531


>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q9P6R9 Cell
           cycle control protein cwf22 {Schizosaccharomyces pombe};
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 900

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 29/124 (23%), Positives = 56/124 (45%)
 Frame = +3

Query: 162 EENDHEVLIRSARGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQK 341
           EE+D +   RS  G +  +  R    A S+ D +  IRS +   +K D  +  ++K  ++
Sbjct: 189 EEDDRQ---RSRGGRRESQRKRRDHRA-SDDDEEGEIRSERRGKEKNDRGSEGLLKRDRR 244

Query: 342 KCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKDKGR 521
           +   T  +E  S        E  R D+ + +     ++ RR   K + +++ KL K+  R
Sbjct: 245 ERDLTDGHENGSRRR-----ESERKDRSRRDDGVRDEKERRHNDKYDDSQRDKLRKEDSR 299

Query: 522 RNRQ 533
           +  +
Sbjct: 300 KREE 303


>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222
          Length = 631

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = +3

Query: 237 GAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRT 416
           G W   D K+N+ + K T + G    C VV  +Q K       E    + CSIN     +
Sbjct: 423 GCWE--DKKSNVTACKDTFR-GRVCECPVVNGVQYKGDGYTSCEPYGPARCSINQGGCWS 479

Query: 417 DKLKSNSDSTCDQSRRKTRKC 479
           +  K  + S C        +C
Sbjct: 480 ETKKGLTFSACSNLETSGCRC 500


>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative contains
           Pfam profile: PF00254, FKBP-type peptidyl-prolyl
           cis-trans isomerases
          Length = 694

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 264 TNIRSRKLTLKKGDPANCEVVKTIQKK 344
           T  ++RK TL+ G+PA CE  KT + K
Sbjct: 426 TRSKARKSTLESGEPAKCE--KTFEAK 450


>At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 147

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +2

Query: 65  SAEHHGAQVLVVDDGRTGPLIG-SGSCRRWRGVGGE*P*SSHSXXXXXXXXXGMSICARC 241
           S  +HG       D   G ++G S SC RW   G E P    +         G+ +CA C
Sbjct: 43  SRSNHGVNTFGSYDEIFGLVLGNSSSCTRWLNAGEELPVVEFT--AEEMMERGLVVCAIC 100

Query: 242 LERM 253
            E +
Sbjct: 101 REEL 104


>At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family; similar to LIM7 GI:431154
           (induced in meiotic prophase in lily microsporocytes)
           from [Lilium longiflorum]
          Length = 251

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 548 QPMSLLAISATLIFSKLDLLILVTFPSFAPTLVASRIAVGL*LIG 414
           QP SLL I+       ++L+ L  F  F+PT  + ++ VGL LIG
Sbjct: 66  QPDSLLVITINGTGLAIELVYLAIFFFFSPT--SRKVKVGLWLIG 108


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +3

Query: 249 ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 428
           + D K NI   +    KGD A+ EVV   ++K   +   EK    +  I  E      +K
Sbjct: 287 DIDEKANIEEARENNYKGDDASSEVVHESEEKTSESENSEKVE-DKSGIKTEEVEDSVIK 345

Query: 429 SNSDSTCD 452
           S   +T D
Sbjct: 346 SVLPNTTD 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,347
Number of Sequences: 28952
Number of extensions: 285078
Number of successful extensions: 883
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)