Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0362
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RLI6 Cluster: Cytochrome c oxidase assembly protein; ...    36   1.4  
UniRef50_Q8IB56 Cluster: Putative uncharacterized protein MAL8P1...    33   7.5  
UniRef50_A5KE71 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_A6F6I6 Cluster: TPR-repeat-containing protein; n=1; Mor...    33   9.9  

>UniRef50_Q7RLI6 Cluster: Cytochrome c oxidase assembly protein;
           n=6; Plasmodium|Rep: Cytochrome c oxidase assembly
           protein - Plasmodium yoelii yoelii
          Length = 433

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
 Frame = -2

Query: 731 FVPDGI*KFYNTFSTQY---FKQVKLIKTKHN*RVNAYILCLIHYFKLYFYYKSCNIT 567
           ++PD + KFY    TQY   F+   +++  H  R+ +Y++ +++ F LYFY K+  +T
Sbjct: 320 YIPDEVKKFYTNNITQYKQLFENTAIVQFNH--RMLSYLI-VLNSFLLYFYSKTMALT 374


>UniRef50_Q8IB56 Cluster: Putative uncharacterized protein MAL8P1.49;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL8P1.49 - Plasmodium falciparum
            (isolate 3D7)
          Length = 1466

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 707  FYNTFSTQYFKQVKLIKTKHN*RVNAYILCLIHYFKLYFYY 585
            +Y     +YF    L K K   ++N  ILCL+ Y   YF+Y
Sbjct: 1201 YYQINGKKYFVFDNLYKLKKTYKINYIILCLLFYRYCYFFY 1241


>UniRef50_A5KE71 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 534

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 686 QYFKQVKLIKTKHN*RVNAYILCLIHYFKLYFYYKSCN 573
           +Y K VK IKT ++ ++N    C + Y  LY +Y  CN
Sbjct: 177 KYIKYVKYIKTIYDEKINKEHCCDLKYRHLYDHYFDCN 214


>UniRef50_A6F6I6 Cluster: TPR-repeat-containing protein; n=1;
           Moritella sp. PE36|Rep: TPR-repeat-containing protein -
           Moritella sp. PE36
          Length = 749

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 686 QYFKQV-KLIKTKHN*RVNAYILCLIHYFKLYFYY 585
           Q  KQV KL + KHN  +N ++L  I    LYFYY
Sbjct: 477 QLQKQVTKLKQAKHNLMINVFLLAAIMLIILYFYY 511


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,435,193
Number of Sequences: 1657284
Number of extensions: 11509822
Number of successful extensions: 19261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19251
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)