Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0362
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    28   1.6  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    27   2.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   5.0  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   5.0  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 18  HPTAQRRSSTVRNDTQLKILFFIF*HEYFKCC----ISLINVHL 137
           H    R  S +R+D+ + +LF    H +F+ C    I LI+VHL
Sbjct: 684 HQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHL 727


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 220 HYFVAGNDLLIYKLIIIIREWLR 288
           HYF   N  ++ KL++II  W R
Sbjct: 87  HYFTVTNSYVVAKLLLIIFPWRR 109


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 182  LIHIQYFDWPLLDITLSLAMTF*FIN**LSSVNGFD 289
            +++++ F WPL  I LSL       +  LS ++GF+
Sbjct: 935  ILYLKVFTWPLYTIFLSLGQILSISSFQLSLLSGFE 970


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 110 LHFLDKCSFNLLCIYFYVQQEKKLLIHIQYFDWPLLDITLSLA 238
           L F   C  ++L   F+      ++  I+ FDW LL ITL ++
Sbjct: 150 LSFYTMCRSSILIFVFFFS----VIFRIEMFDWILLCITLVIS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,347
Number of Sequences: 5004
Number of extensions: 54297
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)