Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0362
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016418-9|AAK18904.1|  186|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF016418-9|AAK18904.1|  186|Caenorhabditis elegans Hypothetical
           protein C49G7.11 protein.
          Length = 186

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 297 YYTSKP-FTDDNYQFINQKVIASDKVMSSKG 208
           +YT K   T+  Y++++  V+ SD+V++SKG
Sbjct: 124 HYTVKDKMTEGGYKYLDDNVVISDRVITSKG 154


>Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 601 NYIFIINHAILHYSNTVCNFGI 536
           NY+  +N A LH+ NT  N GI
Sbjct: 691 NYVLNLNVAYLHHENTTKNIGI 712


>Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 601 NYIFIINHAILHYSNTVCNFGI 536
           NY+  +N A LH+ NT  N GI
Sbjct: 691 NYVLNLNVAYLHHENTTKNIGI 712


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,383,747
Number of Sequences: 27780
Number of extensions: 293882
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)