Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0362
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/35 (22%), Positives = 22/35 (62%)
 Frame = +2

Query: 137 NLLCIYFYVQQEKKLLIHIQYFDWPLLDITLSLAM 241
           ++L  +FYVQ++  + + +  F W ++ + + +A+
Sbjct: 376 SILVPFFYVQEDDDVKLVLLNFGWQMICLIVVIAL 410


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 131 SFNLLCIYFYVQQEKKLLIHIQYFDW 208
           S  LL   +Y+++    L H++ FDW
Sbjct: 262 SHKLLLNRYYLERLSNDLPHLEEFDW 287


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 742 SPHHSYXTEFKNSTTHFQHNILN 674
           SPHH Y     ++ T   +N LN
Sbjct: 524 SPHHEYYDSKSSTETPPSYNQLN 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,563
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)