Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0357
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    47   4e-04
UniRef50_Q6VZV1 Cluster: CNPV046 ankyrin repeat protein; n=1; Ca...    41   0.037
UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    40   0.049
UniRef50_A0D6I8 Cluster: Chromosome undetermined scaffold_4, who...    33   9.9  

>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 235 LKLENGWTDLATFGLELFVEVQRRFK 158
           LKLENGWTDLA FGLEL VEVQR  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_Q6VZV1 Cluster: CNPV046 ankyrin repeat protein; n=1;
           Canarypox virus|Rep: CNPV046 ankyrin repeat protein -
           Canarypox virus (CNPV)
          Length = 450

 Score = 40.7 bits (91), Expect = 0.037
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
 Frame = +1

Query: 301 LIVYHL-LLFYTDKGLILTKNKKIHITTIFTRGLSKTFKNFG---------FKIMRR--- 441
           ++VYH+ +L+Y++ G+      KI++  I +  + K++K            F++  R   
Sbjct: 295 VLVYHIVMLYYSNSGIEKHIGFKINMKKIDSVSILKSYKEKAENDISNMKKFRLSYRYTL 354

Query: 442 --M*NFGKRIIIGRFSNDHSDAKFDNYFTFYSYILHRRIQNVLSTNIRYEADY 594
             +  +GK  II RF N H+     NYFT Y + +   IQ  +  N      Y
Sbjct: 355 LDLFKYGKTNIINRFYNHHAVNTLKNYFTIYYHFIRYEIQEAIEKNFLMNCMY 407


>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 40.3 bits (90), Expect = 0.049
 Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
 Frame = +3

Query: 66  KQKEFVRR--DTSKGKQNWYFYLIPSIFIFM 152
           KQ + +R+  DTSK KQN YFYLIP IFIF+
Sbjct: 47  KQTKGIRQTGDTSKEKQNCYFYLIPRIFIFI 77



 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 32  KDKVLYKINLKQTKGICPTGHIKGKTKLVFLFNSEHFHIYV 154
           + K LYKINLKQTKGI  TG    + +  + +      I++
Sbjct: 37  RPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIFIFI 77


>UniRef50_A0D6I8 Cluster: Chromosome undetermined scaffold_4, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_4,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 312

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 451 FGKRIIIGRFSNDHSDAKFDNYFTFYSYILHRRIQNV 561
           FG RIII  F    S  K  N + +Y Y   RR  NV
Sbjct: 234 FGSRIIIKNFIQSDSSQKISNQYIYYIYSCDRRQLNV 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,465,406
Number of Sequences: 1657284
Number of extensions: 11537583
Number of successful extensions: 22915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22909
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)