Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0357
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.94 
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   8.7  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   8.7  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   8.7  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 559 VLSTNIRYEADYWQITGGRTSC 624
           +LST +R EA Y Q+T  RT C
Sbjct: 463 LLSTKMRQEACYLQLTASRTQC 484


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 523  FYSYILHRRIQNVLSTNIRYEA-DYWQITGGRTSCES*RVGT 645
            FY +   + I    +TN  Y+A  YW +T G+T   S  +GT
Sbjct: 1121 FYGWFGDKAISGWSNTN--YDAYAYWHVTTGQTGMGSFSMGT 1160


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 158 KLHKYENARN*IKIPILFSL*CVPSDKFLLFVLSLFYTKLCLLFID*GTTK 6
           + H Y+   +  K  +LFS    P + +    LSL Y   CLL +    TK
Sbjct: 232 RCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLLILGKSPTK 282


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 219 AGPIWLLLVLNYLWKSRE 166
           +GPIW L   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,890
Number of Sequences: 5004
Number of extensions: 52283
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)