Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0357
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0515 - 3721285-3721440,3721528-3721660,3721758-3721834,372...    29   5.2  

>02_01_0515 -
           3721285-3721440,3721528-3721660,3721758-3721834,
           3722694-3722770,3723441-3723500,3724155-3724527
          Length = 291

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 617 PLVSPNGWGPPXRLFLLXSNXAFRFERWG 703
           PL SP+ W PP R   L        + WG
Sbjct: 10  PLASPSRWSPPSRRLRLRVRAGSSLKEWG 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,742
Number of Sequences: 37544
Number of extensions: 286382
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)