Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0357
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY150829-1|AAN75511.1|  477|Caenorhabditis elegans KVS-2 protein.      31   0.66 
AF541979-1|AAO65852.1|  490|Caenorhabditis elegans KVS-1 protein.      31   0.66 
U97193-2|AAB52444.1|  137|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF106588-2|AAC78488.1|  137|Caenorhabditis elegans Hypothetical ...    31   1.2  

>AY150829-1|AAN75511.1|  477|Caenorhabditis elegans KVS-2 protein.
          Length = 477

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 487 DHSDAKFDNYFTFY-SYILHRRIQNVLSTNIRYEADYWQITGGRTS 621
           + S A FD+ F +Y S  LHR + +V  T    E  YW+I  G TS
Sbjct: 126 ERSAALFDSIFKYYISGQLHRPL-DVCPTEFATELAYWKINDGLTS 170


>AF541979-1|AAO65852.1|  490|Caenorhabditis elegans KVS-1 protein.
          Length = 490

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 487 DHSDAKFDNYFTFY-SYILHRRIQNVLSTNIRYEADYWQITGGRTS 621
           + S A FD+ F +Y S  LHR + +V  T    E  YW+I  G TS
Sbjct: 126 ERSAALFDSIFKYYISGQLHRPL-DVCPTEFATELAYWKINDGLTS 170


>U97193-2|AAB52444.1|  137|Caenorhabditis elegans Hypothetical
           protein C06A5.5 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 460 RIIIGRFSNDHSDAKFDNYFTFYSYILHRRIQNVLSTNIRYEAD 591
           R+ IGRF N  SD   +++F  Y  +    ++N+     R +AD
Sbjct: 3   RVYIGRFPNRASDHDAEHFFCGYEKLPDAIMKNIFGVGYRSDAD 46


>AF106588-2|AAC78488.1|  137|Caenorhabditis elegans Hypothetical
           protein Y76G2A.1 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 460 RIIIGRFSNDHSDAKFDNYFTFYSYILHRRIQNVLSTNIRYEAD 591
           R+ IGRF N  SD   +++F  Y  +    ++N+     R +AD
Sbjct: 3   RVYIGRFPNRASDHDAEHFFCGYEKLPDAIMKNIFGVGYRSDAD 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,115,318
Number of Sequences: 27780
Number of extensions: 289771
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)