Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0357
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    32   0.47 
At1g60240.1 68414.m06784 apical meristem formation protein-relat...    29   3.3  
At3g17750.1 68416.m02265 protein kinase family protein contains ...    29   4.4  
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa...    28   7.6  

>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 50   KINLKQTKGICPTGHIKGKTKLVFLFNSEHFHIYVTFKPSLDFH 181
            K+  +Q   I P   + G+++ +    SE  H+ V  +PSLD H
Sbjct: 1049 KVLRQQAVSIAPNKFLSGRSRSILQRGSESGHLSVDARPSLDLH 1092


>At1g60240.1 68414.m06784 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 175

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 241 VSLKLENGWTDLATFGLELFVEVQRRFKSYINMKMLGIK*KYQFC 107
           V+  + +G TD   +G    +   R  KS    K+LG+K  Y+FC
Sbjct: 64  VNRSVNSGLTDGCEYGCWRIIGRDRVIKSVTTGKILGLKKVYKFC 108


>At3g17750.1 68416.m02265 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 1138

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 484 NDHSDAKFDNYFTFYSYILHRRIQNVLSTN 573
           +DHS A+ D+YF+   Y+L + I+ V ++N
Sbjct: 485 DDHSFAEEDSYFSGEQYVLAKGIEPVTASN 514


>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 346

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -1

Query: 435 HYLEAKIFEGFT*TTCEYCCDVNLFI-FCQNQSFVSIKK--QQMVDNQLFIYLSSIY 274
           HY+E K+ EG      +Y C+  L +  C N     +K   +Q ++ +L +    +Y
Sbjct: 185 HYIEVKLLEGGVPRCLDYQCESKLTLTSCGNLLTPKLKAIWKQRIEEELILVAERVY 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,220
Number of Sequences: 28952
Number of extensions: 252511
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)