Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0355
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 87   VEWNDAPSRRQDGSEGAH 34
            +E N+APSR+     G H
Sbjct: 1917 IERNEAPSRQTGSGHGGH 1934


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 601 IILFTDFYYDIHLV 560
           + LFTDFY D+  V
Sbjct: 476 VTLFTDFYVDLDAV 489


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 296 WFLLPLICFIKLVGTK 249
           W L  +ICF  LVG K
Sbjct: 190 WILSFVICFPPLVGWK 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,539
Number of Sequences: 438
Number of extensions: 3220
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)