Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0355
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    27   7.8  
At1g20400.1 68414.m02544 myosin heavy chain-related                    27   7.8  

>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 308 TFRHWFL-LPLICFIKLVGTKFSTNNVSLFNQQ*YSETI 195
           TFRHWFL LP      L+  KF+   V L+    Y E +
Sbjct: 94  TFRHWFLVLPCFLLALLIHEKFTFLEV-LWTSSLYLEAV 131


>At1g20400.1 68414.m02544 myosin heavy chain-related
          Length = 944

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 110 NRCKNLRIKQCRGRARRLTSRFIII 184
           N C N RIKQ RG  RR     +++
Sbjct: 23  NGCVNARIKQVRGATRRCRFELVVL 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,128,982
Number of Sequences: 28952
Number of extensions: 197969
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)