Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0354
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.7  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   3.9  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    26   3.9  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   6.8  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    25   6.8  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   6.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.0  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   9.0  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 70  DYSDRPXTML-LFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTK 216
           +Y D P T   +  L  + +      V  PSN+ D + ++E P N ++TK
Sbjct: 520 EYRDTPDTPRNIMPLPGLMSADQPIKVTEPSNDADKAIVAEGPNNEEETK 569


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 256 NDLEPYPLALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIMRPEL--YGEPPAMEGLASA 429
           NDL P  +   EE NQ+G    +DQ F   Q+     N+ +  +   + EP    G   +
Sbjct: 31  NDLHP-TMFEGEESNQNGGSVLIDQAFQDIQNPNVNSNMHLENQFQHFHEPNKESGAFGS 89

Query: 430 F 432
           +
Sbjct: 90  Y 90


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 176 LPSLLFEGVGTALTARTAVIAVRENNNIVHGRSE 75
           LP   F  V +A  A T    +R+N+ +VH  S+
Sbjct: 319 LPDPRFTNVLSAFDALTRTYLLRQNSKVVHATSQ 352


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 199 NWDQTKDDNRSLFLNKSDKNDLE 267
           NW +  D   SL     +KNDLE
Sbjct: 546 NWQKETDKKNSLVNEAEEKNDLE 568


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 178 TISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQ 318
           T ++ P ++  T  DN ++ +   D    EPY L L +   Q+ YD+
Sbjct: 24  TTNKFPSDYVPTVFDNYAVTVMIGD----EPYTLGLFDTAGQEDYDR 66


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 229 SLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRF 336
           SL  ++  KND + +PL    + N + Y  +++ +F
Sbjct: 20  SLQSSRKRKNDFDDFPLNKGLKTNNNDYSGSIEPKF 55


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 393 WRTTGNGRTRFC 428
           WRTT +G T FC
Sbjct: 857 WRTTSSGETSFC 868


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 187  ELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSPQS 351
            +L E+  Q  DD+  + + + ++ DL+    A  ++      D++ +Q  DS  S
Sbjct: 4298 DLTESQSQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNS 4352


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 264 GTLPACPQRRRKSRWL*PNG*PTLRLTTV 350
           GT+P CP R + S  +  N  P    TT+
Sbjct: 345 GTIPECPSRNKTSWAVSANAFPVTPNTTI 373


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 277 LALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIMR 381
           L +  E N+  Y+Q V  +  + +   ELDN  +R
Sbjct: 49  LLILREANRKSYEQLVQAKTITAEHKSELDNARIR 83


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 361 LDNLIMRPELYGEPPAMEGLASAFDLQRRKRGSGTKVXGAGAATKXXT 504
           L +LI  P L  +PP +EG  +  DL +R      +  GA       T
Sbjct: 245 LTSLISVPRLPHDPPDLEGDDNIPDLPKRPASIAPQPTGASTIAPQPT 292


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 229  IGYHLLFDPN 200
            +GYHL FDPN
Sbjct: 1038 LGYHLTFDPN 1047


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 283  LSEEGNQDG--YDQTVDQRFDSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQRRKRG 456
            +S +G  +G  Y++ +D     P  N      I+   +Y     M+G   A +  RR+  
Sbjct: 878  ISLKGLNEGVNYEEFLDMLLSLPAENNVETFEIISDSIYANSTIMDGRRFASEFTRRRIA 937

Query: 457  SGTKVXGAGAATKXXTKSGS 516
              T   G  +  K  ++ G+
Sbjct: 938  DLTGKDGQQSNNKSQSELGN 957


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,601
Number of Sequences: 5004
Number of extensions: 38594
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)