Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0354
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204 29 2.2
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 29 2.2
03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368... 29 3.0
08_02_1623 - 28314402-28315094 28 3.9
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 28 3.9
07_03_1363 - 26022333-26023225,26023319-26023451 28 3.9
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 28 5.2
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 27 6.8
12_02_0295 + 17006064-17007063,17007068-17007666 27 9.0
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562... 27 9.0
>09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204
Length = 403
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 103 FSLTAITAVLAVSAVPTPSNNKDGSTISEL-PENWDQTKDDNRSLFLNKSDKNDLEP 270
F L + +A + S K G T + PE+ +QTKDDN + L++ +K L P
Sbjct: 341 FGLICLLFTIAGGVLYQQSVTKKGITAPQHEPESSEQTKDDNEGIELDE-EKQSLVP 396
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +1
Query: 154 PSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQR 333
P N + E E W D+++ +L+K+ + E + S+E N G +Q
Sbjct: 115 PDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEYHNGERSDENNVGG--NAGEQE 172
Query: 334 FDSPQSNG 357
D P G
Sbjct: 173 VDQPPKKG 180
>03_06_0156 +
32035503-32035769,32036436-32036539,32036734-32036844,
32036923-32037073,32037614-32037888,32037998-32038211
Length = 373
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 187 ELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQR 333
+LP NW + D N + KN L EEGN D + +DQ+
Sbjct: 320 KLPSNWKRA-DANSDILNYNGPKNVCSEGGRQLQEEGNGDEWQLYLDQK 367
>08_02_1623 - 28314402-28315094
Length = 230
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 157 SNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLAL--SEEGNQDGYDQ 318
SNN +T + Q DDN +L + SD+ D E Y L +E+ +G+ +
Sbjct: 138 SNNSSSTTHQQQLTTMLQLDDDNYTLQPSSSDQEDFETYVTRLPKAEDFGLEGFQE 193
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 169 DGSTISELPENWDQTKDDNRSLFLNKSDKN----DLEPYPLALSEEGNQDG 309
+GS++S P+ D T+D + ++F +K D N DL +P A+ +E G
Sbjct: 819 EGSSLSRSPQTVDTTRDGDVTMF-DKVDINKGHIDLNFHPTAVRDEERHGG 868
>07_03_1363 - 26022333-26023225,26023319-26023451
Length = 341
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 337 DSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQRRKRGSG--TKVXGAGAATKXXTKS 510
DSP ++ P G E ++ D RK+G G + G+G AT T+S
Sbjct: 205 DSPAASSTSGASQCSPSSAGYVLTTENISRMLDGWARKKGGGGGRRAAGSGPATPGATES 264
Query: 511 GSG 519
SG
Sbjct: 265 ASG 267
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 146 CRRLRTTKMAVPSVNCQKIGIKQKMITDLSS*TRVTKTIWNLTRLPSAKKEIKMAMTK 319
C R+R+ K +N + ++ ITD + ++ + I +TRLP IK A K
Sbjct: 635 CMRIRSDKSTPNDINTYRKVMRS--ITDNITEEKLLEEIHEITRLPMYADRIKQAQAK 690
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 133 AVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSD 252
A +A+P S++ S + E WD +D+ + LN++D
Sbjct: 129 AGAAIPGLSSSAAASAAAAGSEEWDSDSEDDIQIVLNETD 168
>12_02_0295 + 17006064-17007063,17007068-17007666
Length = 532
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 352 NGELDNLIMRPELYGEPPAMEGLASAFDLQ-RRKRGSGTKVXG 477
NGE+ L++ E+ G PPA +A+ F L+ +RKR + + G
Sbjct: 445 NGEISRLLLDDEMDGSPPA--DVANNFMLRCKRKRDADECLAG 485
>04_04_0802 -
28155281-28155725,28155750-28156081,28156164-28156266,
28156347-28156528,28156617-28156800,28156872-28156960,
28157634-28157710,28157837-28157927,28158230-28158430
Length = 567
Score = 27.1 bits (57), Expect = 9.0
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -1
Query: 427 QKRVLPLPVVRHKVQAS**DYRVLHWTVVS-RSVGQPFGHSHLDFLLR*GQAGKVPNRFC 251
+ RVLP + +H VQ + DYRV + + + + + L F + G++ +
Sbjct: 203 ENRVLPALLKKHVVQLTKFDYRVSNRLETNLQKLRCRVNYHALQFTDPILKMGEMLVQRM 262
Query: 250 HSCSRREIGYHLLFDPNFLA 191
+ S R I HL F+P+ LA
Sbjct: 263 RAKSGRFIALHLRFEPDMLA 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,832,018
Number of Sequences: 37544
Number of extensions: 285975
Number of successful extensions: 607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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