Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0354
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           29   1.7  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   29   3.0  
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   28   4.0  
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)                     28   5.3  
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)          27   7.0  
SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)                27   7.0  
SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             27   9.3  
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = +1

Query: 160 NNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFD 339
           +N DG   S+   N D   DDN S   N  D ND         E+ + D  D   D   D
Sbjct: 27  DNDDGDDYSDSDHNDDDDDDDNDSDNNNVDDDNDGNDDDDDSDEDYDDDDNDDNDDDNDD 86

Query: 340 SPQSNGELDN 369
           +   N + D+
Sbjct: 87  NDDDNDDNDD 96


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 114  RYYSGPCCQRSADAFEQQRWQYH 182
            RY+SGPCC RS  +  +++ + H
Sbjct: 1498 RYFSGPCCNRSIASKIREKTEVH 1520


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +1

Query: 163 NKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQD------GYDQTV 324
           +++ STI   P+ +  +++D+R    N     D  P   + S+E N++         ++ 
Sbjct: 640 SRNSSTIESSPKRFSWSQEDSRVQMRNSPAVTDGAPNRFSWSQENNKERSRNSSSTSESS 699

Query: 325 DQRFDSPQSNGELDNLIMRPELYGEPP-AMEGLASAFDLQRRKRGS 459
            +RF   Q N + D +   P+L  + P   EG       ++R R +
Sbjct: 700 PKRFSWSQENSK-DVVFAGPDLPADNPFNREGFGRQSMSEKRGRAA 744


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 429 CRSESFHCRWFAIKFRPHDKIIEF 358
           C    F C +F + FRP++K++ F
Sbjct: 72  CEKRLFDCCFFLVTFRPNNKLVVF 95


>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 145 VPTPSNNKDGSTISELPENWDQTKDDNRSL--FLNKSDKNDLEPYPLALSEEGNQDGYDQ 318
           V   S+N D    S   +N D+  ++N +     NKS+ ND +          N DG+D 
Sbjct: 328 VDNNSHNNDEKNKSNSNDNNDENNNNNSNNKDSNNKSNNNDNKSNSNNTENNSNNDGFDN 387

Query: 319 TV 324
           ++
Sbjct: 388 SI 389


>SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)
          Length = 126

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +1

Query: 166 KDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSP 345
           KDG T     + W   +  N+S+   K +K ++E   +   +   Q    Q ++++ D  
Sbjct: 50  KDGKTKDGKTKRWKNKRWKNKSMEKQKMEKQEMEKQEMEKQKMEEQKMEKQKMEKQKDGK 109

Query: 346 QSNGE 360
             +G+
Sbjct: 110 TKDGK 114


>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 253 KNDLEPYPLALSEEGNQDGYDQTVDQRF 336
           +  L  Y   LS + +QDGYDQ + + F
Sbjct: 350 RKKLRGYKTRLSSQNSQDGYDQGMAENF 377


>SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)
          Length = 228

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 169 DGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQ 330
           D S +SE   + DQ  DD     + KSD++D+ P      ++ + DG D  +++
Sbjct: 77  DESDVSETDPSKDQYDDDGDDNEIEKSDESDV-PESDPSKDQYDDDGDDNELEK 129


>SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 SAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNK 246
           S  PT ++ K     + + +N+  T DD  S F+ K
Sbjct: 15  STTPTKTSKKQNLKATPMKQNYSNTDDDQASSFVEK 50


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 124 AVLAVSAVPTPSNNKDGSTISELPENWDQTKDD 222
           A  A +A   PS+    ST+  LP++WD   DD
Sbjct: 500 AAAAAAAASEPSSGGPSSTV--LPKHWDPIPDD 530


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 91  TMLLFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDN 225
           T  L   T++     V+A   PS   DG T   L  NW    + N
Sbjct: 276 TTCLSGFTSLPGPSGVTAFSQPSRWDDGQTNRHLSNNWSPPSEAN 320


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 25  PHFKXXLXHFILLSIDYSDRPXTMLLFSLT 114
           PH    + HFI+L ++  D P T L  S T
Sbjct: 145 PHTSAVVEHFIMLVVECFDAPGTCLAVSNT 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,426,769
Number of Sequences: 59808
Number of extensions: 301574
Number of successful extensions: 713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)