Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0354
         (520 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119636-1|AAM50290.1|  620|Drosophila melanogaster RE43020p pro...    31   1.2  
AE014296-619|AAF47751.2|  594|Drosophila melanogaster CG12017-PA...    31   1.2  
M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger ho...    30   1.6  
AY060681-1|AAL28229.1|  127|Drosophila melanogaster GH11902p pro...    30   1.6  
AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA p...    30   1.6  
AF241795-1|AAF64049.1|  587|Drosophila melanogaster E protein tr...    29   2.9  
AE014298-2089|AAF48412.1|  700|Drosophila melanogaster CG32594-P...    29   2.9  
AY060905-1|AAL28453.1|  556|Drosophila melanogaster GM05229p pro...    29   5.0  
BT023721-1|AAY85121.1|  673|Drosophila melanogaster AT01259p pro...    28   6.6  
AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA...    28   8.7  

>AY119636-1|AAM50290.1|  620|Drosophila melanogaster RE43020p
           protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/94 (23%), Positives = 41/94 (43%)
 Frame = +1

Query: 133 AVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGY 312
           A +A     N +D    +   E+ D+ ++D+R    + SD    +        E   D  
Sbjct: 186 ASNAAEEEDNAEDEDADANNEED-DEEEEDDRDEEDDDSDSTAEQDQDQDHEPEAEADNE 244

Query: 313 DQTVDQRFDSPQSNGELDNLIMRPELYGEPPAME 414
           D+ VD+   +P+S+ E +N    P ++   PA +
Sbjct: 245 DEDVDEAVSAPESDNEKEN---TPSIFSGAPAAQ 275


>AE014296-619|AAF47751.2|  594|Drosophila melanogaster CG12017-PA
           protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/94 (23%), Positives = 41/94 (43%)
 Frame = +1

Query: 133 AVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGY 312
           A +A     N +D    +   E+ D+ ++D+R    + SD    +        E   D  
Sbjct: 186 ASNAAEEEDNAEDEDADANNEED-DEEEEDDRDEEDDDSDSTAEQDQDQDHEPEAEADNE 244

Query: 313 DQTVDQRFDSPQSNGELDNLIMRPELYGEPPAME 414
           D+ VD+   +P+S+ E +N    P ++   PA +
Sbjct: 245 DEDVDEAVSAPESDNEKEN---TPSIFSGAPAAQ 275


>M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger
            homeodomain protein 2 protein.
          Length = 3005

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +2

Query: 323  LTNASTH--HSPMENSIILS*G---LNFMANHRQWKDSLLHSTYNDVREEAAQKXAG 478
            +TNA++H  H+  ++S +++ G   LN+  N    K  + H+  N+V  E A+K AG
Sbjct: 2929 VTNATSHAIHTARQDSDVIAEGNCILNYDTNGGDSKSHVQHNLPNEVVSEDARKIAG 2985


>AY060681-1|AAL28229.1|  127|Drosophila melanogaster GH11902p
           protein.
          Length = 127

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +2

Query: 323 LTNASTH--HSPMENSIILS*G---LNFMANHRQWKDSLLHSTYNDVREEAAQKXAG 478
           +TNA++H  H+  ++S +++ G   LN+  N    K  + H+  N+V  E A+K AG
Sbjct: 44  VTNATSHAIHTARQDSDVIAEGNCILNYDTNGGDSKSHVQHNLPNEVVSEDARKIAG 100


>AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA
            protein.
          Length = 3005

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +2

Query: 323  LTNASTH--HSPMENSIILS*G---LNFMANHRQWKDSLLHSTYNDVREEAAQKXAG 478
            +TNA++H  H+  ++S +++ G   LN+  N    K  + H+  N+V  E A+K AG
Sbjct: 2929 VTNATSHAIHTARQDSDVIAEGNCILNYDTNGGDSKSHVQHNLPNEVVSEDARKIAG 2985


>AF241795-1|AAF64049.1|  587|Drosophila melanogaster E protein
           transcript A protein.
          Length = 587

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/84 (29%), Positives = 37/84 (44%)
 Frame = +1

Query: 103 FSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLA 282
           ++ TA+TA      +P PS +       EL +      DD  SL LN  +          
Sbjct: 493 YASTALTANATAPPLP-PSTDSSEPIYQELDQQ-RLIIDDKYSLPLNSDEDPPYSEPSNM 550

Query: 283 LSEEGNQDGYDQTVDQRFDSPQSN 354
           +SE GN   Y+ T ++ + S QSN
Sbjct: 551 MSEYGNDYNYNGT-NESYTSEQSN 573


>AE014298-2089|AAF48412.1|  700|Drosophila melanogaster CG32594-PB,
           isoform B protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/84 (29%), Positives = 37/84 (44%)
 Frame = +1

Query: 103 FSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLA 282
           ++ TA+TA      +P PS +       EL +      DD  SL LN  +          
Sbjct: 606 YASTALTANATAPPLP-PSTDSSEPIYQELDQQ-RLIIDDKYSLPLNSDEDPPYSEPSNM 663

Query: 283 LSEEGNQDGYDQTVDQRFDSPQSN 354
           +SE GN   Y+ T ++ + S QSN
Sbjct: 664 MSEYGNDYNYNGT-NESYTSEQSN 686


>AY060905-1|AAL28453.1|  556|Drosophila melanogaster GM05229p
           protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +1

Query: 133 AVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLN---KSDKNDLEPYPLALSEEGNQ 303
           A  + P   NN D     +  +N     DD+    L+   ++D  D EP     SEE +Q
Sbjct: 268 AAQSAPATDNNDDDDDDDDQDKNDADDGDDDEFESLDQQFENDPEDTEPAKAVESEEQDQ 327

Query: 304 DGYDQ 318
           D  D+
Sbjct: 328 DQADE 332


>BT023721-1|AAY85121.1|  673|Drosophila melanogaster AT01259p
           protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 268 PYPLALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIMR--PELYGEPPAMEGLASAFDLQ 441
           P  ++ +E   Q    QT    F S Q +    + + R  PEL    P++   A++  L 
Sbjct: 192 PTQVSAAEVAPQPRASQTAQMPFPSQQQDNRWVSSLRRRDPELQPTLPSINSNANSSSLS 251

Query: 442 RRKRGSGTKV--XGAGAAT 492
           +   GS   V   GAGA T
Sbjct: 252 QSHHGSAGNVGLAGAGAPT 270


>AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA
            protein.
          Length = 5106

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 169  DGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGN 300
            DG   +   EN +   DDN+ L L   ++  LE Y   L E GN
Sbjct: 2785 DGDVDALWIENMNSVMDDNKLLTLANGERIRLENYCALLFEVGN 2828


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.312    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,477,893
Number of Sequences: 53049
Number of extensions: 460495
Number of successful extensions: 1110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)