Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0354
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.12
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 32 0.28
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 32 0.28
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 31 0.37
AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical ... 30 0.86
U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related (u... 29 2.0
AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein. 29 2.0
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p... 29 2.6
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p... 29 2.6
U58764-1|AAB00723.2| 191|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 3.5
AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical ... 28 4.6
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 27 6.1
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 27 6.1
Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical pr... 27 8.0
U28928-6|AAA68338.1| 188|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 130 LAVSAVPTPSNNK--DGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQ 303
L SA+ NNK D E+ + + DN+S SD++D++PY + EG +
Sbjct: 403 LTFSAMDKEENNKLFDYLNKKEIKIR-NSHRIDNKSAGYGSSDEDDIDPYKSTVKAEGRE 461
Query: 304 ---DGYDQTVDQRFD 339
D D++ D+ +D
Sbjct: 462 QDDDSDDESTDEDYD 476
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 31.9 bits (69), Expect = 0.28
Identities = 27/105 (25%), Positives = 45/105 (42%)
Frame = +1
Query: 130 LAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDG 309
L +S +P +++ STIS + W + +D L+ + D DL Y ++ + + +
Sbjct: 105 LPISPLPYHIVSRNNSTISYIVSTWGEVQDKRSVLYKKRFD--DLTYYEACVASKIDSEI 162
Query: 310 YDQTVDQRFDSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQR 444
+ F QS L NL L P LAS+ D +R
Sbjct: 163 MWNVCEYIFPQIQS---LSNLDKNAVLRNFSPKWSLLASSIDFER 204
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 31.9 bits (69), Expect = 0.28
Identities = 27/105 (25%), Positives = 45/105 (42%)
Frame = +1
Query: 130 LAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDG 309
L +S +P +++ STIS + W + +D L+ + D DL Y ++ + + +
Sbjct: 107 LPISPLPYHIVSRNNSTISYIVSTWGEVQDKRSVLYKKRFD--DLTYYEACVASKIDSEI 164
Query: 310 YDQTVDQRFDSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQR 444
+ F QS L NL L P LAS+ D +R
Sbjct: 165 MWNVCEYIFPQIQS---LSNLDKNAVLRNFSPKWSLLASSIDFER 206
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 31.5 bits (68), Expect = 0.37
Identities = 31/114 (27%), Positives = 46/114 (40%)
Frame = +1
Query: 64 SIDYSDRPXTMLLFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLN 243
S DY + L +LT + + + TP+N D S IS + + K+ +R L
Sbjct: 128 SADYQQKKMVNLQHTLTP-SPYASSTPKHTPTNQMDRSKISFVIKPQINLKNCSRELLSP 186
Query: 244 KSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIMRPELYGEPP 405
KS P P S Y T + F S N +L+NL ++ PP
Sbjct: 187 KSSIFSSSPKPKETS-----PFYKTTPTKTFSSTPKNLKLENLKSPEDIKSPPP 235
>AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical
protein K09D9.11 protein.
Length = 861
Score = 30.3 bits (65), Expect = 0.86
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 170 MAVPSVNCQKIGIKQKMITDLSS*TRVTKTIWNLTRLPSAKKEI 301
+ P V + IG+ K++ DL R K + N+T P K+I
Sbjct: 286 LQTPMVLSESIGLSAKVLEDLEKTRRNRKRLLNITEFPDEVKQI 329
>U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 17 protein.
Length = 180
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 148 PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDL 264
P P NN G T+ L E D+ K+D+ ++ L + DK ++
Sbjct: 67 PVPVNNVVGFTLKLLIEWCDKHKEDDPAIALAEKDKKNI 105
>AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein.
Length = 180
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 148 PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDL 264
P P NN G T+ L E D+ K+D+ ++ L + DK ++
Sbjct: 67 PVPVNNVVGFTLKLLIEWCDKHKEDDPAIALAEKDKKNI 105
>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 154 PSNNKDGSTISE-LP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 327
P NK G I + LP WD D R L L+K+D YP+A E + + +++
Sbjct: 1435 PKINKAGRCIGQSLPWVAWDALCDLRRQLMLDKNDAVLRGKYPIAARLE---EEIENSIE 1491
Query: 328 QRFD 339
++FD
Sbjct: 1492 RQFD 1495
>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
protein F10B5.7 protein.
Length = 1780
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 154 PSNNKDGSTISE-LP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 327
P NK G I + LP WD D R L L+K+D YP+A E + + +++
Sbjct: 1435 PKINKAGRCIGQSLPWVAWDALCDLRRQLMLDKNDAVLRGKYPIAARLE---EEIENSIE 1491
Query: 328 QRFD 339
++FD
Sbjct: 1492 RQFD 1495
>U58764-1|AAB00723.2| 191|Caenorhabditis elegans Hypothetical
protein M03E7.4 protein.
Length = 191
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 432 ECRSESFHCRWFAIKFRPHDK 370
EC E +HCRW + FR + K
Sbjct: 62 ECSEEFYHCRWQSDGFRTYRK 82
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 3.5
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +2
Query: 113 PLLQRSLLSAQCRRL----RTTKMAVPSVNCQKIGI--KQKMITDLSS*TRVTKTIWNLT 274
P R+ S CR+ + TK P ++CQ IG+ +Q T +S + KTI
Sbjct: 221 PPCLRACPSCPCRKRLMLGKRTKRDAPGLHCQPIGLLGQQSPPTLIS---KPVKTIIKSK 277
Query: 275 RLPSAKKEIKMAMTKRLTNASTHH 346
+ K ++++TK+L S+ H
Sbjct: 278 SRVAGTKTSQVSVTKKLIEQSSDH 301
>AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical
protein W04C9.3 protein.
Length = 445
Score = 27.9 bits (59), Expect = 4.6
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +1
Query: 112 TAITAVLAVSAVPTPSNNKDGSTISELP-ENWDQTKDDNRSLFLNKSDKNDLEPYPLALS 288
T +T V VP P +N G+T +P E W + N + + EP P ++
Sbjct: 276 TPLTQVPITGQVPMPFDNTIGNTFDGIPLEPWMKEPSPPTDDVANITSEG--EPMPRLIT 333
Query: 289 EEGN---QDGYDQTVDQRFDSPQSNGELDNLIMRPELYGEPPAMEGLASAFDLQRR 447
EE + + + ++RF N ++L + P + EP +E + + RR
Sbjct: 334 EEEQYQIESNHVEAREKRFAHRLFNITSEDLYVEPTV--EPMEVEMPGAPRETARR 387
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 RPXTMLLFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDD-NRSLFLNKSDKN 258
RP T +L A T+ A +A T +LP+ W+ D R +++ + K+
Sbjct: 185 RPATAKRDTLAAPTSTAAAAAAATAGGTPAAGAEEQLPDGWEMRFDQYGRKYYVDHTTKS 244
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 RPXTMLLFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDD-NRSLFLNKSDKN 258
RP T +L A T+ A +A T +LP+ W+ D R +++ + K+
Sbjct: 185 RPATAKRDTLAAPTSTAAAAAAATAGGTPAAGAEEQLPDGWEMRFDQYGRKYYVDHTTKS 244
>Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical
protein T25E12.5 protein.
Length = 300
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +1
Query: 106 SLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLAL 285
SLT A+L+++ + D ++E NW +R F+ + YP A
Sbjct: 141 SLTVYRALLSLATSSGSFDGGDQGLLNEYFSNWRDLPSAHRLPFIYNMTAGEFYSYPAAY 200
Query: 286 SEEGNQ 303
+ G Q
Sbjct: 201 RKYGAQ 206
>U28928-6|AAA68338.1| 188|Caenorhabditis elegans Hypothetical
protein C44B7.7 protein.
Length = 188
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 283 GQAGKVPNRFCHSCSRREIGYHLLFDP 203
G K+PN + S +E GYH L P
Sbjct: 84 GCVWKMPNEYSDSLDEQEFGYHRLMVP 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,658
Number of Sequences: 27780
Number of extensions: 227709
Number of successful extensions: 553
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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