Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0354
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.7  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   7.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 148  PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 327
            P P   +   T+   P   D+ ++D+ S      D+    P PL++S  G++D  D T D
Sbjct: 1364 PVPERPERVPTVDLSPSPSDRGRNDDGS------DRLTSPPTPLSISRAGSRD-EDSTRD 1416

Query: 328  Q-RFDSPQSNGELDN 369
              + D      E+ N
Sbjct: 1417 STKLDRSSREREVHN 1431


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 316 QTVDQRFDSPQSNGELDN 369
           Q +DQ+F  PQ N   DN
Sbjct: 124 QKLDQKFIFPQENNYNDN 141


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 294 FFAEGKRVRFQIVFVTLV 241
           FF+ GK+  +Q+ F+ +V
Sbjct: 2   FFSSGKQQVYQLFFIQIV 19


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 271 KVPNRFCHSCSRREIG 224
           +V N  C+ C+ R+IG
Sbjct: 59  EVLNNHCNRCTSRQIG 74


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 307 GYDQTVDQRFDSPQSNGELDNLI 375
           GYD +V   F  P +  E+D ++
Sbjct: 16  GYDNSVRPDFGGPPATVEVDIMV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,430
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)