Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0353
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.16 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.85 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   6.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   6.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   6.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   6.0  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   8.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 316  HSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPP 411
            ++A   P Q P   TC+ L   +  + W  PP
Sbjct: 1094 YTAEGVPEQPPDKATCTTLTAQTIRVSWVSPP 1125


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 285  TATPPPSKVAPQCGKPANAAPTKRYL 362
            T  PPP+ V P+  KP+      +Y+
Sbjct: 1084 TTIPPPAVVMPEVDKPSQPCEPGQYV 1109


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 297 PPSKVAPQCGKPANAAPTKRYLLSIGRIFH 386
           P + +A QC K +N +P      ++G+ FH
Sbjct: 36  PLAMLAAQCNKLSNKSPPPLADAAVGKGFH 65


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 316 HSAG-NQPTQHPPSVTCSRLGGSSTNLRWSGPPSP 417
           H+ G + P   PPS + S  G  + ++R  G P P
Sbjct: 63  HTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGP 97


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 316 HSAG-NQPTQHPPSVTCSRLGGSSTNLRWSGPPSP 417
           H+ G + P   PPS + S  G  + ++R  G P P
Sbjct: 219 HTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGP 253


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 334 PTQHPPSVTCSRLGGSS 384
           PT H P +  S+ GG S
Sbjct: 207 PTDHSPVLNLSKSGGGS 223


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 447 PPFNIHYRYRFHAPNHDTYE 506
           P FN +Y+Y     N++ Y+
Sbjct: 209 PQFNFNYQYNQAYSNYNNYQ 228


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 447 PPFNIHYRYRFHAPNHDTYE 506
           P FN +Y+Y     N++ Y+
Sbjct: 229 PQFNFNYQYNQAYSNYNNYQ 248


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 464 LPLSFPRTEPRHVRGVV 514
           L   FP T+P+ +RG +
Sbjct: 145 LAWEFPETKPKKIRGKI 161


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 298 HHPKWPHSAGNQPTQHP 348
           HH +W +S  N   Q+P
Sbjct: 72  HHGQWNYSPDNHFEQYP 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,675
Number of Sequences: 336
Number of extensions: 4297
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)