Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0353
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 79 5e-16
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 30 0.40
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 29 0.94
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 2.9
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 27 3.8
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 5.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.0
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 6.6
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 8.7
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 8.7
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 8.7
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 8.7
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 79.4 bits (187), Expect = 5e-16
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 7/226 (3%)
Frame = +3
Query: 12 DWKSLTIPACLPITTDYFPDKRSLQNDYLVSDYNLLPDDVNADFAQNRAIYKDPLTTMEV 191
+W S+ P LP+T YFP + L + + Y + ++ +F Q + E+
Sbjct: 798 NWLSMCTPGALPLTFSYFPSEEELNDKFEEYTYTI---GIDPEFTQ--------MNQQEL 846
Query: 192 FKELVSQRLAQGFQLIVG----VNENEVIESHCASTATPPPSKVAPQCGKPANAAPTKRY 359
E++ QRL++G+Q++V V+ + +++ A T T V Q +
Sbjct: 847 LAEMICQRLSRGYQIVVNPAAAVSYSGNPKANKAGTITDFSRSVNNQRNGHLTVG-SDAV 905
Query: 360 LLSIGRI-FHKLTL--VGSTITVTRYRPRHPYPPFNIHYRYRFHAPNHDTYEVSWVSFTT 530
LS+G FH+L+ VG I V RY + + Y Y F + N Y S ++F+
Sbjct: 906 CLSLGDSQFHRLSCDSVGYNIEVKRY-VKKVSGQGKMRYDYNFWSKNECKYVKSNITFSA 964
Query: 531 EKLETYYWNYMDHYICTRGDSDFALVEPLKYWRFRTLLLPLYNPAT 668
Y WNY+D IC G + L + +KYWR R +LLP+ +T
Sbjct: 965 NDSANYNWNYVDQLIC--GFETY-LPDSVKYWRARFVLLPMSTTST 1007
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 282 STATPPPSKVAPQCGKPANAAPTKRYLLSIGRIFHKLTLVGSTITVTRYRPRHPYP 449
ST PPP + PA A+P +G +H T G+ + + +P HP P
Sbjct: 905 STLPPPPPTASMTASAPAIASPPPP---KVGETYHPPTASGTRVPPVQ-QPSHPNP 956
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = -1
Query: 458 IEWRIWMXXXXXXXXXXGPDQRKFVEDPPNREQVTLGGCCVGWFPALWGH 309
I+ + W R F E P EQ T GG C+ P + H
Sbjct: 145 IDLKYWYCSCSQFSYNAFNSSRSFDEPMPKNEQETWGGRCLSHHPTICSH 194
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 405 STITVTRYRPRHPYPPFNIHYRYRFHAPNHDTYE 506
+TI R+R YPP N+ Y + H H+ E
Sbjct: 571 TTINNLRFRVLDTYPPNNVIYLFSLHIIFHNELE 604
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 681 REFVSLPDCREAIVESGTASTSEAQLVRNHCRRAYK 574
R ++ +C I + TSE L+ CR+A++
Sbjct: 18 RRWIDCIECHNEIADHPLLKTSELTLICKKCRKAFR 53
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 729 HDASXLXICRSGSNRLREFVSLPDCREAIVESGT 628
HD S I S + + F+ DC +A V SGT
Sbjct: 480 HDTSTSQILVSDTYKQEPFIRALDCLDAAVASGT 513
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -3
Query: 624 STSEAQLVRNHCRRAYKCNGPCSSSSKFPVFLS*TKPTTPRTCRGSVRGNDN 469
ST + + + + +K NG SSS ++P+ + ++ T R S+ G D+
Sbjct: 51 STLKDEFLADGLESRWKTNGEKSSSIRYPLVMEFSQLKEDLTNRASLNGYDS 102
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 313 PHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSLDTDPDIHIRHS 456
P SA HP +++ GSS++ +S PP+ S T +HS
Sbjct: 94 PTSATLSTAAHPVHTNAAQVAGSSSSYVYSVPPTNS--TTSQASAKHS 139
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 744 LVGPNHDASXLXICRSGSNRLREFVSLPDCREA 646
L P + + I +G+ + EF++ PDCR+A
Sbjct: 525 LFSPFGELGRILIPPAGTIAIIEFLNAPDCRQA 557
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 441 PYPPFNIHYRYRFHAPNHDTYEVSWVSFTTE 533
P PF + + HA + Y++SW T+
Sbjct: 1107 PREPFKLVLEFFGHADTNMRYKISWTQLNTQ 1137
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 198 ELVSQRLAQGFQLIVGVNENEVIESHCASTATPPPSKVAPQCGKPANAAP 347
E+V+ R +G LIVGV + ++ P P++ P KP + P
Sbjct: 187 EVVATR--RGSPLIVGVKSEQKLKVDFVDVEFPEPAEGLPGTPKPTSLHP 234
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 340 QHPPSVTCSRLGGSSTNLRWSGPPSPSLDT 429
Q P ++ +LG R S P SPSL++
Sbjct: 138 QSPQGISVEKLGKEDNRSRSSTPASPSLES 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,604
Number of Sequences: 5004
Number of extensions: 71817
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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