Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0353
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 31 1.3
12_02_1180 + 26727171-26727239,26728782-26729642 30 1.7
02_01_0302 - 2021221-2023305 30 1.7
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 29 3.0
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 3.9
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 29 3.9
07_01_0355 + 2597592-2598280,2599150-2599426 29 3.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 5.2
06_01_0973 + 7530436-7530510,7530566-7531297 28 6.9
10_01_0274 - 2901033-2901778,2902475-2902634 28 9.1
07_03_1453 - 26649922-26650064,26650148-26650244,26651260-266514... 28 9.1
07_01_0138 + 1010926-1011948,1012722-1012910,1013504-1013722,101... 28 9.1
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 28 9.1
03_02_0872 - 11983151-11983432,11983488-11983598,11983744-119840... 28 9.1
03_01_0515 - 3864796-3865425 28 9.1
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 28 9.1
>07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 359 PALDWEDLPQTYAGRVHHHRH*IQTQTSISAIQYTLPLSFPRTEPRH 499
P DW DLP H+ R +Q + S + +P P T RH
Sbjct: 1401 PGCDWHDLPDEKRNVNHYER--VQVKLSSGQLVDLIPWCLPNTAKRH 1445
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +1
Query: 208 HKD*LRVSS*LWVLTRMK*SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVTCSRLGGSST 387
HKD L S +L + V+++ + SAG Q Q +TCS S +
Sbjct: 111 HKDWLAESE--LILPKKDKDEELVQEQEQEEEENYKMSAGMQFQQEQLVITCSYCLSSQS 168
Query: 388 NLRWSGPPSPSLD 426
W GP P+ D
Sbjct: 169 PQWWDGPSGPTCD 181
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 295 PHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSLDTDPDI 441
P HP P S+ P+ PP T + S + ++ PP S D PD+
Sbjct: 516 PSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADR-PDV 563
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 298 HHPKWPHSAGNQPTQH--PPS-VTCSRLGGSSTNLRWSGPPSPSLDTDPD 438
H PHS+G+ P Q+ PP+ + S+L + ++ S PP+PS+ P+
Sbjct: 860 HSSMMPHSSGSIPVQNSLPPAPPSASQLQVHAPPVQGSVPPNPSIMHTPN 909
>07_03_0627 -
20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 295 PHHPKWPHSAGNQPTQHPPSVTCSRLGGS 381
P P P SAG+ PT S T R GGS
Sbjct: 42 PGSPPTPSSAGSTPTSSSSSPTARRSGGS 70
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +3
Query: 480 HAPNHDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFALVEPLKYWRFRTLLLPLYN 659
H H + S+ S T + ++ D +C A ++PL RF ++L+P++
Sbjct: 843 HQEEHGISDSSYASLATSAADAFHVMMSDSEVCLN-KKFHARIKPLYKQRFFSILMPIFL 901
Query: 660 PATKQ 674
K+
Sbjct: 902 SKIKE 906
>07_01_0355 + 2597592-2598280,2599150-2599426
Length = 321
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 295 PHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSL 423
P PK P GN PT PS G +T +GP S +L
Sbjct: 66 PAAPKLPLLPGNTPTLRSPSAAAGCSWGLATAAAATGPKSTAL 108
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 298 HHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSLDTDP 435
+ P P SA P+ T GG S + + PPSPS DT P
Sbjct: 406 YSPSTPCSAPPSPSSGTSPTTPG--GGYSPSTPCNAPPSPSSDTSP 449
>06_01_0973 + 7530436-7530510,7530566-7531297
Length = 268
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 304 PKWPHSAGNQPTQHPPSVTCSRLGGSS 384
P P + P HP S +CSR GG +
Sbjct: 212 PPPPRGTASPPCSHPCSCSCSRKGGEN 238
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 294 PPPSKVAPQCGKPANAAP 347
PPP AP+CG+PA P
Sbjct: 220 PPPPTPAPECGQPAPEYP 237
>07_03_1453 -
26649922-26650064,26650148-26650244,26651260-26651418,
26651478-26651603
Length = 174
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 273 HCASTATPPPSKVAPQCGKPANAAPTKRYLLSIGRIFHKLTLVGSTIT 416
H + PPP + P+C + APT+ +LLS+ ++ L+ + ++
Sbjct: 64 HLRLASAPPP--LPPRCFQLVPPAPTRSFLLSVELVWPGAVLMNTYLS 109
>07_01_0138 +
1010926-1011948,1012722-1012910,1013504-1013722,
1014041-1014061
Length = 483
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 42 LPITTDYFPDKRSLQNDYLVSDYNLLPD 125
L +T Y + L+N+YL+ + +LPD
Sbjct: 333 LSLTLAYMSELNDLENEYLMEEMTMLPD 360
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 432 PRHPYPPFNIHYRYRFHAPNH 494
P HP+PP + H + H P+H
Sbjct: 51 PHHPHPPHHPHPPHHPHPPHH 71
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 432 PRHPYPPFNIHYRYRFHAPNH 494
P HP+PP + H + H P+H
Sbjct: 57 PHHPHPPHHPHPPHHPHPPHH 77
>03_02_0872 -
11983151-11983432,11983488-11983598,11983744-11984007,
11984038-11984163,11984257-11984481,11984757-11985311,
11985390-11985695,11985815-11986369
Length = 807
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 346 GAALAGFPHCGATLDGGGVAVDAQ 275
GAA AG GA + GGGVAV A+
Sbjct: 136 GAASAGGGVAGAVVGGGGVAVSAR 159
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 304 PKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSLDTDP 435
P P A P PPSVT S ++ L PP PS+ + P
Sbjct: 40 PSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSP 83
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 324 GKPANAAPTKRYLLSIGRIFHKLTLVGSTI--TVTRYRPRHPYPP 452
G A+ L+S G + K TL + T YRPR P PP
Sbjct: 265 GGRTRASSVLMQLISCGSVSVKSTLASPVMARTAAHYRPRPPRPP 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,396,264
Number of Sequences: 37544
Number of extensions: 509830
Number of successful extensions: 1793
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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