Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0353
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 112 3e-25
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 33 0.33
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 31 0.76
SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_38971| Best HMM Match : SRCR (HMM E-Value=0) 30 1.7
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 30 2.3
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08) 29 4.0
SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7) 29 4.0
SB_31372| Best HMM Match : Arm (HMM E-Value=0) 29 5.3
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0) 28 7.0
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 28 7.0
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_19802| Best HMM Match : fn3 (HMM E-Value=0) 28 9.3
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 112 bits (269), Expect = 3e-25
Identities = 78/217 (35%), Positives = 108/217 (49%), Gaps = 19/217 (8%)
Frame = +3
Query: 9 VDWKSLTIPACLPITTDYFPDKRSLQNDYLVSDYNLLPDDVNADFAQNRAIYKD------ 170
VDWKSL +PACLP+T++Y P K SL++ YL Y L D + A+ R+ +
Sbjct: 610 VDWKSLVVPACLPLTSEYNPYKESLRSYYLEFHYELCVGDEDYTSARPRSSSRPSEGLEE 669
Query: 171 ------PLTTMEVFKELVSQRLAQGFQLIVGVNENEVIESHCASTATPPPSKVAPQCGKP 332
P T + ELV+QRL++GFQ+ ST+ P S PQ P
Sbjct: 670 LRRSRHPTTVEQALLELVAQRLSRGFQI---------------STSYPKISPDRPQ-SFP 713
Query: 333 ANAA-----PTKRYLLSIGRIFHKLTLVG--STITVTRYRPRHPYPPFNIHYRYRFHAPN 491
N T Y LS+GR H+L+++ S I VTRYRPRHP + YRYR
Sbjct: 714 RNIPCDDDFETDEYFLSLGRNLHRLSVIPNRSQINVTRYRPRHPSSTSTVKYRYRLWTGK 773
Query: 492 HDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFA 602
Y+ F ++L+ Y WNY+D +I GD +F+
Sbjct: 774 GVDYQPHQAEFQHDELDKYNWNYLDQHII--GDQEFS 808
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 281 VNGDSPTIQSGPTVRETSQRSTHQALPALDWEDLPQTYA 397
V D SG V + S++STH PAL WE+L QT A
Sbjct: 317 VKSDGRPSSSGQDVYDGSRQSTHG--PALPWEELAQTQA 353
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 414 TVTRYRPRHPY---PPFNIHYRYRFHAP 488
T TRYR +PY PP+ +Y YR++ P
Sbjct: 479 TTTRYRYYYPYRYYPPYRYYYPYRYYYP 506
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 414 TVTRYRPRHPYP---PFNIHYRYRFHAP 488
T TRYR +PY P+ +Y YR++ P
Sbjct: 443 TTTRYRYYYPYRYYYPYRYYYPYRYYYP 470
>SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 277 VRQRRLPHHPKWPHS-AGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPS 420
+R R P HP P +G +HPP+ T L + + PP PS
Sbjct: 29 LRSNRAPPHPSHPKGRSGRSGLRHPPTRTLPYLQPARHRVIDEAPPPPS 77
>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2436
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 301 HPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSL 423
HP ++A + PT PP+V SS +LRW P S+
Sbjct: 1435 HPIVRYTAEDVPTTAPPNVRILNKTSSSIDLRWDAIPIKSV 1475
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 301 HPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSL 423
HP ++A + PT PP+V SS +LRW P S+
Sbjct: 1703 HPIVRYTAEDVPTTAPPNVRILNKTSSSIDLRWDAIPIKSV 1743
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 171 PLTTMEVFKELVSQRLAQGFQLIVGVNENEVIESHCASTATPP-PSKVAPQCGKPANAAP 347
P TT + +++ + + N+V+++H S T P P+ + P G P +
Sbjct: 526 PATTSTTPTTMPTRKPSTAQPSVSTTKPNDVVKTHMTSVVTKPKPTSIPPTTGSPKDGVL 585
Query: 348 TKR 356
KR
Sbjct: 586 AKR 588
>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
Length = 1381
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 495 RGSVRGNDNGSVY*MADMDVW 433
RG RG +NGS+Y AD+D W
Sbjct: 242 RGGKRGRNNGSLY-TADLDTW 261
>SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7)
Length = 398
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 249 NENEVIESHCASTATPPPSKVAPQCGKPANAAPTKR 356
+EN+ E+ AS PPP +VA C A T R
Sbjct: 289 DENDCAETKTASFPNPPPPRVAVSCKSATVARVTPR 324
>SB_31372| Best HMM Match : Arm (HMM E-Value=0)
Length = 656
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 131 ERRFRTEPSYIQRSPDHNGSIQGVGLTKISSG 226
+R TEP+ +QR P HN I GV + I G
Sbjct: 442 DREEITEPADMQRRPGHNVVIDGVRMDDIVEG 473
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 168 DPLTTMEVFKELVSQRLAQGFQLIVGVNENEVIESHCASTAT 293
DP+ + K LVS+ + I G NE EVI H AST T
Sbjct: 351 DPIYCVLTLKSLVSRTNSNPANDIFG-NEMEVITDHTASTTT 391
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 277 VRQRRLPHHPKWPHSAGNQPTQHPPSVTCSR 369
V R LPH P N+P+ PP T SR
Sbjct: 754 VNTRNLPHQNGPPRDKPNKPSLPPPPTTTSR 784
>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
Length = 373
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 486 PNHDTYEVSWVSFTTEKLETYYWNYMDHYI 575
P D + +F + KL YYW Y+ H I
Sbjct: 260 PMEDVFRRPNFNFESSKLMYYYWTYISHRI 289
>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 432 PRHPYPPFNIHYRYRFHAPNHDTYEVS--WVSFT 527
PR+P P N Y + H P DTY ++ W+S+T
Sbjct: 97 PRYPTPSPNPGYLH--HHPTLDTYTITQPWISYT 128
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 152 PSYIQRSPDHNGSIQGVGLTKISSGFPADC 241
P + P +N S Q G K GFPADC
Sbjct: 727 PQQLSPKPKYNQSQQHSGHMKREVGFPADC 756
>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 277 VRQRRLPHHPKWPHSAGNQP-TQHPPSVT 360
+RQR L +HP H+ P QHPP V+
Sbjct: 93 LRQRTLRYHPLKQHALTYHPLKQHPPEVS 121
>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1075
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 328 NQPTQHPPSVTCSRLGGSSTNLRWSGPPSPSL 423
N PT P +VT L +S + W PP +L
Sbjct: 396 NAPTAPPQNVTAMALSSTSIYVTWQPPPPGTL 427
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,319,129
Number of Sequences: 59808
Number of extensions: 568124
Number of successful extensions: 1855
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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