Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0353
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    51   1e-06
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    51   1e-06
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL032636-2|CAA21603.1|  212|Caenorhabditis elegans Hypothetical ...    29   4.7  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81552-3|CAB04486.1|  470|Caenorhabditis elegans Hypothetical pr...    28   8.1  
L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncog...    28   8.1  
AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isofor...    28   8.1  
AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isofor...    28   8.1  
AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.     28   8.1  
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    28   8.1  
AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell...    28   8.1  
AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell...    28   8.1  

>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +3

Query: 3    IGVDWKSLTIPACLPITTDYFPDKRSLQNDYLVSDYNL 116
            IG DWKSL   A LPITTD+FPD ++LQ  + +++Y++
Sbjct: 1091 IGTDWKSLVRSALLPITTDFFPDGQTLQTQFRMNEYSI 1128



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
 Frame = +3

Query: 171  PLTTMEVFKELVSQRLAQGFQLIVGVNENEVIESHCASTATPPPS--------------- 305
            P     V+++L+ QRL +G+Q++  + +  ++E  C +   P  S               
Sbjct: 1191 PTMAQLVYEQLILQRLQRGYQIV--LLDKSLVEVSCEAAKKPSSSRPDLSRKQVTKSEKE 1248

Query: 306  KVAPQCGKPANAAP----TKRYLLSIGRIFHKLTLVGSTITVTRYRPR 437
            +V     + + + P        +LS  + +HKL L    + +T +RP+
Sbjct: 1249 RVGSGGSERSRSNPRTIQNPEIVLSFNKFYHKLALEKDVVRITLFRPK 1296



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 453  FNIHYRYRFHAPNHDTYEVSWVSFTTEKLETYYWNYMD 566
            FN  Y Y F  P+  TYE S        L+   W+  D
Sbjct: 1342 FNTTYMYYFQVPDASTYEKSATKLRHHDLDKLNWSAFD 1379


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +3

Query: 3    IGVDWKSLTIPACLPITTDYFPDKRSLQNDYLVSDYNL 116
            IG DWKSL   A LPITTD+FPD ++LQ  + +++Y++
Sbjct: 1091 IGTDWKSLVRSALLPITTDFFPDGQTLQTQFRMNEYSI 1128



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
 Frame = +3

Query: 171  PLTTMEVFKELVSQRLAQGFQLIVGVNENEVIESHCASTATPPPS--------------- 305
            P     V+++L+ QRL +G+Q++  + +  ++E  C +   P  S               
Sbjct: 1191 PTMAQLVYEQLILQRLQRGYQIV--LLDKSLVEVSCEAAKKPSSSRPDLSRKQVTKSEKE 1248

Query: 306  KVAPQCGKPANAAP----TKRYLLSIGRIFHKLTLVGSTITVTRYRPR 437
            +V     + + + P        +LS  + +HKL L    + +T +RP+
Sbjct: 1249 RVGSGGSERSRSNPRTIQNPEIVLSFNKFYHKLALEKDVVRITLFRPK 1296



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 453  FNIHYRYRFHAPNHDTYEVSWVSFTTEKLETYYWNYMD 566
            FN  Y Y F  P+  TYE S        L+   W+  D
Sbjct: 1342 FNTTYMYYFQVPDASTYEKSATKLRHHDLDKLNWSAFD 1379


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 296 PTIQSGPTVRETSQRSTHQALPALDWEDLPQT 391
           PT QS  + +E+S+       PA++  DLPQT
Sbjct: 305 PTAQSSKSPKESSKEPPKSLCPAINRSDLPQT 336


>AL032636-2|CAA21603.1|  212|Caenorhabditis elegans Hypothetical
           protein Y40B1B.5 protein.
          Length = 212

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 ATPPPSKVAPQCGKPANAAPTKRYLLSIGR 377
           A PPP K AP   K   AAPT   + S+GR
Sbjct: 31  APPPPQKAAPAAPKTLKAAPTFA-MESLGR 59


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 297 PPSKVAPQCGKPANAAPTKR 356
           P S VAP+   PA+AAPT+R
Sbjct: 236 PSSAVAPRRAPPASAAPTRR 255


>Z81552-3|CAB04486.1|  470|Caenorhabditis elegans Hypothetical
           protein F56G4.4 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 700 QWVESSSRICFVAGL*RGNSRVRNRQYFRGSTSAKSLSPRVQ 575
           QWV +  R C +  +  GN+R     + RG      L  R++
Sbjct: 4   QWVSTGKRFCDICKVWFGNNRASQDHHDRGERHKAMLQQRIR 45


>L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncogene
           protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 265 SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPP-----SPSLDT 429
           S L+ + R  PH       +G +  +  P V C+ LG +S +   S PP      P+L  
Sbjct: 350 SLLSTQARHRPHFQSGHILSGARMNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409

Query: 430 DPDI 441
            P++
Sbjct: 410 SPNV 413


>AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isoform 3
           protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 265 SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPP-----SPSLDT 429
           S L+ + R  PH       +G +  +  P V C+ LG +S +   S PP      P+L  
Sbjct: 306 SLLSTQARHRPHFQSGHILSGARMNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 365

Query: 430 DPDI 441
            P++
Sbjct: 366 SPNV 369


>AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isoform 2
           protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 265 SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPP-----SPSLDT 429
           S L+ + R  PH       +G +  +  P V C+ LG +S +   S PP      P+L  
Sbjct: 350 SLLSTQARHRPHFQSGHILSGARMNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409

Query: 430 DPDI 441
            P++
Sbjct: 410 SPNV 413


>AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 265 SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPP-----SPSLDT 429
           S L+ + R  PH       +G +  +  P V C+ LG +S +   S PP      P+L  
Sbjct: 350 SLLSTQARHRPHFQSGHILSGARMNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409

Query: 430 DPDI 441
            P++
Sbjct: 410 SPNV 413


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 286 RRLPHHPKWPHSAGNQPTQHPPSVTCS--RLGGSSTNLRWSGPPSPSLDTDP 435
           R +P  P  P   G    QH   V     RLGG++  +  S PP P LD  P
Sbjct: 56  RNVPWGP--PGRQGPAVHQHHQMVQVHTRRLGGAAPTMHHSRPPPPPLDRRP 105


>AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform b protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 265 SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPP-----SPSLDT 429
           S L+ + R  PH       +G +  +  P V C+ LG +S +   S PP      P+L  
Sbjct: 392 SLLSTQARHRPHFQSGHILSGARMNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 451

Query: 430 DPDI 441
            P++
Sbjct: 452 SPNV 455


>AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform a protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 265 SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVTCSRLGGSSTNLRWSGPP-----SPSLDT 429
           S L+ + R  PH       +G +  +  P V C+ LG +S +   S PP      P+L  
Sbjct: 350 SLLSTQARHRPHFQSGHILSGARMNRLHPLVDCTPLGSNSPSSTCSSPPGGLIGQPTLGQ 409

Query: 430 DPDI 441
            P++
Sbjct: 410 SPNV 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,350
Number of Sequences: 27780
Number of extensions: 411092
Number of successful extensions: 1276
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)