Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0353
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16670.1 68417.m02518 expressed protein                             32   0.47 
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ...    29   2.5  
At1g12820.1 68414.m01489 transport inhibitor response protein, p...    29   2.5  
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa...    29   4.4  
At5g55280.1 68418.m06889 cell division protein FtsZ, chloroplast...    28   7.6  
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ...    28   7.6  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    28   7.6  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   7.6  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   7.6  
At1g28260.2 68414.m03469 expressed protein                             28   7.6  
At1g28260.1 68414.m03468 expressed protein                             28   7.6  

>At4g16670.1 68417.m02518 expressed protein 
          Length = 429

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 27/97 (27%), Positives = 45/97 (46%)
 Frame = +3

Query: 174 LTTMEVFKELVSQRLAQGFQLIVGVNENEVIESHCASTATPPPSKVAPQCGKPANAAPTK 353
           L+T E+   L SQ+  +  QL    N +++ +    +   PPP     Q GK A+A   +
Sbjct: 74  LSTSEISLALSSQKSDK--QLNKNPNISQLADVTSLAPVAPPPPL---QTGKLASAVHAR 128

Query: 354 RYLLSIGRIFHKLTLVGSTITVTRYRPRHPYPPFNIH 464
           R   +IG+ FH    VG  ++  + R R      ++H
Sbjct: 129 R-TGTIGKWFHHREFVGGKVSAVKKRDRVRVEKAHLH 164


>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
           protein contains Pfam profile PF02809: Ubiquitin
           interaction motif
          Length = 599

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 331 QPTQHPPSVTCSRLGGSSTNLRWSGPPSPSL 423
           +P QH P V C R   S     WSG P PS+
Sbjct: 569 KPVQHAPLVDCIRTRWSRAACSWSGDP-PSI 598


>At1g12820.1 68414.m01489 transport inhibitor response protein,
           putative E3 ubiquitin ligase SCF complex F-box subunit;
           similar to transport inhibitor response 1 GI:2352492
           from [Arabidopsis thaliana]
          Length = 577

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 113 SVTGRRERRFRTEPSYIQRSPDHNGSIQGVGLTKISSGFP 232
           + T +  +  R  PS +    D+N S+  VGL  IS+G P
Sbjct: 330 AATCKELQELRVFPSDVHGEEDNNASVTEVGLVAISAGCP 369


>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 272

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 272 SLCVNGDSPTIQSGPTVRETSQRSTHQALPALDWED 379
           +L VNGD P I+ G  +R  S  +T +      W D
Sbjct: 45  TLDVNGDGPAIEPGSLLRTISWETTFEQDSLQSWND 80


>At5g55280.1 68418.m06889 cell division protein FtsZ, chloroplast,
           putative (FTSZ) identical to SP|Q42545 Cell division
           protein ftsZ homolog, chloroplast precursor {Arabidopsis
           thaliana}; similar to FtsZ1 [Tagetes erecta] GI:8896066;
           contains Pfam profiles PF00091: Tubulin/FtsZ family,
           GTPase domain, PF03953: Tubulin/FtsZ family, C-terminal
           domain
          Length = 433

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 99  VSDYNLLPDDVNADFAQNRAIYKDPLTTM 185
           +SD   +P  VN DFA  +A+ KD  T M
Sbjct: 259 ISDIITIPGLVNVDFADVKAVMKDSGTAM 287


>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
           nearly identical to SCARECROW [Arabidopsis thaliana]
           GI:1497987
          Length = 653

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 325 GNQPTQHPPSVTCSRLGGSSTNLRWSGPPSP 417
           G QP  H P  T S  G SS+N R   PP P
Sbjct: 9   GGQPPPHSPLRTTSS-GSSSSNNRGPPPPPP 38


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 278 TVRFDYFILVNTHNQLET-LS*SL*DQLLEYFHCGQGIFVYSSVLCE 141
           T +F+  +  N HNQ+ T L+ S   + L  + C Q  +V S +LCE
Sbjct: 423 TRKFEQIVSTNAHNQVVTGLAWSYDGRCL--YSCSQDNYVRSWILCE 467


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 295 PHHPKWPHSAGNQPTQHPPSVTC-SRLGGSSTNLRWSGPPSPSLDTDP 435
           P H   PH+  + PT H P   C S     ST    S P  P+    P
Sbjct: 85  PSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPP 132


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 295 PHHPKWPHSAGNQPTQHPPSVTC-SRLGGSSTNLRWSGPPSPSLDTDP 435
           P H   PH+  + PT H P   C S     ST    S P  P+    P
Sbjct: 85  PSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPP 132


>At1g28260.2 68414.m03469 expressed protein
          Length = 880

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 248 NTHNQLETLS*SL*DQLLEYFHCGQGIFV 162
           N HNQL  L+  + D+LL  +HC + + V
Sbjct: 180 NPHNQLAVLATYVSDELLALYHCVRSLAV 208


>At1g28260.1 68414.m03468 expressed protein
          Length = 880

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 248 NTHNQLETLS*SL*DQLLEYFHCGQGIFV 162
           N HNQL  L+  + D+LL  +HC + + V
Sbjct: 180 NPHNQLAVLATYVSDELLALYHCVRSLAV 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,582,081
Number of Sequences: 28952
Number of extensions: 390737
Number of successful extensions: 1238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)