Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0352
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   8.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.8  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 79  PRSTPPLSTPSN 90


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 207 SSSGNSFSRHRPTSAEHTLSGTKSLN 130
           SS  N F+RH      HT   T S N
Sbjct: 263 SSPSNRFTRHLIQRRTHTRHTTTSHN 288


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 231 PGCTPPRSTPSS 266
           P  TPP STPS+
Sbjct: 123 PRSTPPLSTPSN 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,198
Number of Sequences: 336
Number of extensions: 2793
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)