Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0352
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    28   1.0  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   3.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   4.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.4  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   5.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.4  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 198 GNSFSRHRPTSAEHTLSGTKSLNRT--LTTSLA*LYTEKTLS 79
           G +F  H+P S   T +GT + N T  +TTS     TEKT S
Sbjct: 764 GKTFRGHKPASRPSTANGTSNQNTTSEITTSET-TATEKTPS 804


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 493 QNIKNYKNPFTFKERIKIPYSLKLKKNGRQRLGSA-PGIS 377
           QN   Y+    + +R+K  YS   KKNG   L SA P +S
Sbjct: 29  QNCIVYQEECHYSKRLKRSYSATKKKNGNPVLESAIPSLS 68


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 414 FFFSFSEYGILILSLNVNGFL*FFMFCVRDLSNYSNETYFYY 539
           FFF  S    ++ SLNV+      M  VRD S       FYY
Sbjct: 339 FFFKKSMIPSVLASLNVSVSYGLMMNLVRDFSKNLENPNFYY 380


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 151 VRYEILEQNSDNFIGLTVHGKDFISQSSLQQDGGRPRGFV 32
           V ++I ++N ++ + LTVH  DF+    + Q     RGF+
Sbjct: 586 VVHDISDENQEDHLNLTVHKADFLRMRVVGQFN---RGFI 622


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = -3

Query: 375 TSMNHGNHLQSGRAVCSSAYTAKQKTINLTCGQSATVRTVCCAVECTLGAGSPHARSSSG 196
           +S +  +   S  +  SS+ ++   + + +   S++  +   +V  T    S H+ SSS 
Sbjct: 165 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSS 224

Query: 195 NSF--SRHRPTSAEHTLSGTKSLNRTLTTSLA*LYTEKTLSLKALCSKMAAAL 43
           +S   S  RP+S+   ++   S     T ++    +  + S +   S  A AL
Sbjct: 225 SSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALAL 277


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 163 RTHPVRYEILEQNSDNFIGLTVHGK 89
           +T  V  E+L+ N+++ IGLTV  K
Sbjct: 415 KTEDVSIEVLDNNNESDIGLTVKKK 439


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -2

Query: 532 KYVSFE*FDKSLTQNIKNYKNPFTFKERIKIPYSLKLKKNGRQRLGSAPG-ISDLHEPR 359
           K  SFE  +KSL  +I  Y+N  + K+++    S +L++  R  L  A G +++++  R
Sbjct: 393 KLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEE-ARSSLAHATGKLAEINSER 450


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 166 RRTHPVRYEILEQNSDNFIGL 104
           +  HP R + + +N+DN +GL
Sbjct: 215 KHVHPTRAKAIRENADNPVGL 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,111
Number of Sequences: 5004
Number of extensions: 43513
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)