Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0352
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0115 - 13008835-13008877,13009117-13010621                       29   2.4  
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537...    29   2.4  
07_03_1565 - 27760407-27760463,27760905-27761513                       29   3.2  
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954...    28   7.4  
08_02_1169 + 24858843-24858993,24859495-24859788,24860303-248603...    27   9.8  

>10_07_0115 - 13008835-13008877,13009117-13010621
          Length = 515

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 137 DFVPDRVCSAEVGRCLEKLLPELLRACGDPAPRVHSTAQHTVL 265
           D  P R    E GR L +LLPE     G+PA R+ +  +  VL
Sbjct: 36  DKYPVRAADLEPGR-LRRLLPEAAPEFGEPAERILADVRRDVL 77


>07_03_1164 +
           24451808-24451868,24452690-24452923,24453735-24453768,
           24454372-24454627
          Length = 194

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = -3

Query: 396 ALPLAFLTSMNHGNHLQSGRAVCSS--AYTAKQKTINLTCGQSATVRTVCCAVEC-TLGA 226
           A+ +A L  +   + + S   VC S     A QKTI+  CG  A   ++    +C     
Sbjct: 3   AVVVAALVLLMSSSLVASDWCVCRSDQPQAALQKTIDYACGAGADCNSIHEQGQCFNPNT 62

Query: 225 GSPHARSSSGNSFSRHRPTSAEHTLSGTKSLNRTLTTS 112
              H   ++ + F R+R   A    +GT     TLTTS
Sbjct: 63  VVAHCSWAANSYFQRNRAMGATCDFTGT----ATLTTS 96


>07_03_1565 - 27760407-27760463,27760905-27761513
          Length = 221

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 266 TVADCPQVRLIVFCFAV*ADEHTALPDCKWLPWFMEVRNARGRA 397
           T ADC  VR I+  F V  DE     D  +      + +ARGRA
Sbjct: 77  TFADCSSVRAILRGFRVAVDERDVSMDAAFRRELRSLLDARGRA 120


>03_06_0347 +
           33293915-33294104,33295143-33295284,33295365-33295485,
           33295590-33295652,33296524-33296553,33297411-33297905
          Length = 346

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/60 (36%), Positives = 26/60 (43%)
 Frame = -3

Query: 321 AYTAKQKTINLTCGQSATVRTVCCAVECTLGAGSPHARSSSGNSFSRHRPTSAEHTLSGT 142
           AY A Q    L CG SA +  +CC V    GA    +R     SF R    +A  T S T
Sbjct: 245 AYAASQLPA-LICGLSAQLPALCCQV--INGASCGASRRGVRPSFIRSHCATATCTTSST 301


>08_02_1169 +
           24858843-24858993,24859495-24859788,24860303-24860349,
           24860779-24861277,24862233-24862274,24862376-24862666,
           24862793-24862932,24863278-24863770,24864105-24864484
          Length = 778

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 417 KTVDSGLALPLAFLTSMNHGNHLQSGRAVCSSAYTA 310
           KTV SG+ +P  ++  +   N++Q  +++   A++A
Sbjct: 242 KTVASGIMVPKEYIWPVTTNNYIQPAKSIVRDAHSA 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,919
Number of Sequences: 37544
Number of extensions: 317392
Number of successful extensions: 1010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)