Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0352
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    31   0.54 
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   3.8  
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    28   5.0  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    27   8.7  

>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 282 GQSATVRTVCCAVECTLGAGSPHARSSSGNSFSRHRPTSAEHTLSGTKSLNRTLTTS 112
           G ++   T  C V  +LG   P   SSS NSF+    +    T S T +L+   T+S
Sbjct: 55  GWTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSS 111


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 282 GQSATVRTVCCAVECTLGAGSPHARSSSGNSFSRHRPTSAEHTLSGTKSLNRTLTTS 112
           G ++   T  C V  +LG   P   SSS NSF+    +    T S T +L+   T+S
Sbjct: 55  GWTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSS 111


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 95   VYSQANEVVRVLFKDFVPDRVCSAEVGRCLEKL-LPELLRACGDPAPRVHSTAQHTVLTV 271
            +Y+ + E V  + +D    ++   +V + ++   LP  ++  G  A RV      T  T+
Sbjct: 2314 IYTPSRENVEGVLRDVQRLKMSIGDVKKRVQTANLPPAIKLAGKNAKRVVQVLTETATTI 2373

Query: 272  ADCPQV 289
            ADC  +
Sbjct: 2374 ADCHDI 2379


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 95   VYSQANEVVRVLFKDFVPDRVCSAEVGRCLEKL-LPELLRACGDPAPRVHSTAQHTVLTV 271
            +Y+ + E V  + +D    ++   +V + ++   LP  ++  G  A RV      T  T+
Sbjct: 2314 IYTPSRENVEGVLRDVQRLKMSIGDVKKRVQTANLPPAIKLAGKNAKRVVQVLTETATTI 2373

Query: 272  ADCPQV 289
            ADC  +
Sbjct: 2374 ADCHDI 2379


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 95   VYSQANEVVRVLFKDFVPDRVCSAEVGRCLEKL-LPELLRACGDPAPRVHSTAQHTVLTV 271
            +Y+ + E V  + +D    ++   +V + ++   LP  ++  G  A RV      T  T+
Sbjct: 2314 IYTPSRENVEGVLRDVQRLKMSIGDVKKRVQTANLPPAIKLAGKNAKRVVQVLTETATTI 2373

Query: 272  ADCPQV 289
            ADC  +
Sbjct: 2374 ADCHDI 2379


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
           of males (increasedx chromosome loss) protein 1, isoform
           a protein.
          Length = 1281

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 384 AFLTSMNHGN--HLQSGRAVCSSAYTAKQKTINL 289
           AF   +N+G   HL  G+ V S+AY+ + ++IN+
Sbjct: 105 AFTRGVNNGTSEHLLDGQTVTSAAYSQEMESINI 138


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 128 LFKDFVPDRVCSAEVGR--CLEKLLPELLRACGDPAPR 235
           + KD +PD +C   VG+  C++KL+ E    CG+   R
Sbjct: 140 IIKDKLPDELCKNMVGKDNCMKKLVSE---TCGEEDSR 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,807
Number of Sequences: 27780
Number of extensions: 260328
Number of successful extensions: 731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)